Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30022
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61540.1 68416.m06893 peptidase family protein similar to pro...    29   2.6  
At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-...    29   3.5  
At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-...    29   3.5  
At5g01030.2 68418.m00006 expressed protein                             29   3.5  
At5g01030.1 68418.m00005 expressed protein                             29   3.5  
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-...    29   4.6  
At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger) fa...    28   8.0  
At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent phos...    28   8.0  
At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent phos...    28   8.0  
At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent phos...    28   8.0  

>At3g61540.1 68416.m06893 peptidase family protein similar to prolyl
           aminopeptidase (proline iminopeptidase) from Aeromonas
           sobria SP|P46547, Propionibacterium freudenreichii
           subsp. shermanii GI:2415704, Hafnia alvei GI:1754489
          Length = 515

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = +2

Query: 524 SLPGLQDFIRKVTFAFVSGLGSEAGAAPFRVSVSLTTEGKQCADYLGDVFFSPIDLRFGT 703
           S+PGL DF R+  F  V    +EAG      SV +   G+  ++++   +FS  +LR   
Sbjct: 31  SVPGLIDFYRRRRFCRVITSMAEAG------SVYVDVAGESKSEHVTGKWFSVPELRLRD 84

Query: 704 HR 709
           HR
Sbjct: 85  HR 86


>At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-1,
           Zea mays, EMBL:X58573
          Length = 235

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 622 YRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKG 491
           Y    + GP L P+  D  KR+F DE+LK   T +     S KG
Sbjct: 99  YLDNTFEGPSLYPE--DHAKREFGDELLKYTDTFVKTMYVSLKG 140


>At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-1
           [Zea mays] EMBL:X58573
          Length = 237

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 622 YRHAEWSGPCLGPKPADECKRDFSDEVLK-AGQTVIGLQAGSNKG 491
           Y  + + GP L P+  D  KR+F +E+LK   +T +    GS KG
Sbjct: 101 YVDSNFDGPSLYPE--DSAKREFGEELLKYVDETFVKTVFGSFKG 143


>At5g01030.2 68418.m00006 expressed protein 
          Length = 744

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = -1

Query: 735 NQSIRCTRHRCVPNRRSMGEKKTSPK*SAHCLPSVVRLTDTRNGAAPASDPSPLTNANV 559
           NQ+  C R R  P RR + +    PK S   LPS  R        + +S+P P+TN+NV
Sbjct: 413 NQNTHC-RSRVSPLRRFL-DPLLKPKASESVLPSKAR--------SSSSNPKPITNSNV 461


>At5g01030.1 68418.m00005 expressed protein 
          Length = 744

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = -1

Query: 735 NQSIRCTRHRCVPNRRSMGEKKTSPK*SAHCLPSVVRLTDTRNGAAPASDPSPLTNANV 559
           NQ+  C R R  P RR + +    PK S   LPS  R        + +S+P P+TN+NV
Sbjct: 413 NQNTHC-RSRVSPLRRFL-DPLLKPKASESVLPSKAR--------SSSSNPKPITNSNV 461


>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 649

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -2

Query: 761 RTSQTSSLQIKAYGVPDIDVFQTVDLWEKKRHRPSSQHTVCPRS*DLQTRGMERPLPRTQ 582
           R+    +L++++  V  ++    V  WE    RP   ++ CP S +LQ +  + PL + +
Sbjct: 371 RSKNLPTLKVRSSPVVSVNEISAVPEWESPTERPLVMNS-CPISNELQIQPEQLPLNKEE 429


>At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518 and a IBR domain,
           Pfam:PF01485
          Length = 316

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +3

Query: 468 RFCPD*VAPLLDPA---CRPITVCPAFRTSSEKSRLHSSAGLGPRQ 596
           RFC D +    D A    +P+  CP+F  +SE  R      L P+Q
Sbjct: 178 RFCFDCIKKQADVALEFAKPVVNCPSFGCNSELQREDCEGVLKPKQ 223


>At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase, putative /
           phosphoglyceromutase, putative strong similarity to
           SP|Q42908 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase (EC 5.4.2.1)
           (Phosphoglyceromutase) {Mesembryanthemum crystallinum};
           contains Pfam profile PF01676: Metalloenzyme superfamily
          Length = 560

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -3

Query: 586 PKPADECKRDFSDE---VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 455
           P PA +  +D   +   ++KA  T +GL +  + G ++ G N LGAGR
Sbjct: 46  PTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 93


>At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase, putative /
           phosphoglyceromutase, putative strong similarity to
           SP|Q42908 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase (EC 5.4.2.1)
           (Phosphoglyceromutase) {Mesembryanthemum crystallinum};
           contains Pfam profile PF01676: Metalloenzyme superfamily
          Length = 560

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -3

Query: 586 PKPADECKRDFSDE---VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 455
           P PA +  +D   +   ++KA  T +GL +  + G ++ G N LGAGR
Sbjct: 46  PTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 93


>At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase, putative /
           phosphoglyceromutase, putative strong similarity to
           SP|Q42908 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase (EC 5.4.2.1)
           (Phosphoglyceromutase) {Mesembryanthemum crystallinum};
           contains Pfam profile PF01676: Metalloenzyme superfamily
          Length = 557

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -3

Query: 586 PKPA-DECKRDFSDE--VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 455
           P PA D  K    D   ++KA  T +GL +  + G ++ G N LGAGR
Sbjct: 44  PTPAMDSLKHGAPDTWTLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,538,700
Number of Sequences: 28952
Number of extensions: 345038
Number of successful extensions: 697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)