Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0121
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase, ...    29   1.8  
At4g14746.1 68417.m02269 expressed protein                             27   9.5  
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea...    27   9.5  

>At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 639

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 270 VTDGATEDLALFCMKSLSDSLPGSVMSMTSYFIFFESKIIRTRC*RFFTS 121
           V DG  E+L L         + G  +S T+++IF      R    RFFTS
Sbjct: 526 VYDGDVEELDLLVGLMAEKKIKGFAISETAFYIFLIMATRRLEADRFFTS 575


>At4g14746.1 68417.m02269 expressed protein
          Length = 250

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 572 FFNRTSLLYFFRCFNG 525
           FF+R SL+ FF CF+G
Sbjct: 97  FFDRKSLISFFLCFSG 112


>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
            family protein contains 2 WD-40 repeats (PF00400);
            autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
            and autoantigen locus HSU17474 (GI:596134) [Homo sapiens]
          Length = 1322

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/70 (22%), Positives = 39/70 (55%)
 Frame = +2

Query: 56   ILKNTLSNMVVKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDITEPGRESDKDFMQ 235
            +++ T+S+ + + +  GI G+K V + ++ V   L++   +         GR+  ++ ++
Sbjct: 1038 VIEKTVSSAITESFQRGI-GDKAVNQLEKSVNSKLETTVARQIQAQFQTSGRQVLQEGLR 1096

Query: 236  NNAKSSVAPS 265
            ++ +SSV PS
Sbjct: 1097 SSMESSVIPS 1106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,746,001
Number of Sequences: 28952
Number of extensions: 172672
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)