Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0108
(421 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 109 7e-25
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 109 7e-25
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 109 1e-24
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 109 1e-24
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 109 1e-24
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 109 1e-24
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 105 1e-23
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 105 1e-23
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 105 1e-23
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 103 4e-23
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 92 2e-19
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 91 3e-19
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 60 8e-10
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 57 4e-09
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 57 6e-09
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 49 1e-06
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 44 4e-05
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 34 0.045
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 33 0.10
At1g16690.2 68414.m01999 transcription factor-related similar to... 29 1.3
At1g16690.1 68414.m01998 transcription factor-related similar to... 29 1.3
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 29 1.7
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 3.9
At5g66360.2 68418.m08367 ribosomal RNA adenine dimethylase famil... 26 9.0
At5g66360.1 68418.m08366 ribosomal RNA adenine dimethylase famil... 26 9.0
At3g48860.2 68416.m05337 expressed protein 26 9.0
At3g48860.1 68416.m05336 expressed protein 26 9.0
At3g07870.1 68416.m00962 F-box family protein contains F-box dom... 26 9.0
At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin ... 26 9.0
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 109 bits (262), Expect = 7e-25
Identities = 58/111 (52%), Positives = 65/111 (58%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 267
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 268 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLTEAPLNPK 420
+ P LTEAPLNPK
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 115
Score = 106 bits (254), Expect = 7e-24
Identities = 45/46 (97%), Positives = 46/46 (100%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVL
Sbjct: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVL 106
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 109 bits (262), Expect = 7e-25
Identities = 58/111 (52%), Positives = 65/111 (58%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 267
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 268 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLTEAPLNPK 420
+ P LTEAPLNPK
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 115
Score = 106 bits (254), Expect = 7e-24
Identities = 45/46 (97%), Positives = 46/46 (100%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVL
Sbjct: 61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVL 106
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 109 bits (261), Expect = 1e-24
Identities = 58/111 (52%), Positives = 65/111 (58%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 267
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 268 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLTEAPLNPK 420
+ P LTEAPLNPK
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 115
Score = 105 bits (253), Expect = 9e-24
Identities = 45/46 (97%), Positives = 45/46 (97%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
QSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVL
Sbjct: 61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVL 106
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 109 bits (261), Expect = 1e-24
Identities = 58/111 (52%), Positives = 65/111 (58%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 267
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 268 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLTEAPLNPK 420
+ P LTEAPLNPK
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPK 115
Score = 105 bits (252), Expect = 1e-23
Identities = 44/46 (95%), Positives = 45/46 (97%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
QSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+L
Sbjct: 61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPIL 106
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 109 bits (261), Expect = 1e-24
Identities = 58/111 (52%), Positives = 65/111 (58%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 267
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 268 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLTEAPLNPK 420
+ P LTEAPLNPK
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 115
Score = 105 bits (253), Expect = 9e-24
Identities = 45/46 (97%), Positives = 45/46 (97%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
QSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVL
Sbjct: 61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVL 106
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 109 bits (261), Expect = 1e-24
Identities = 58/111 (52%), Positives = 65/111 (58%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 267
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 268 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLTEAPLNPK 420
+ P LTEAPLNPK
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPK 115
Score = 105 bits (252), Expect = 1e-23
Identities = 44/46 (95%), Positives = 45/46 (97%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
QSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+L
Sbjct: 61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPIL 106
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 105 bits (252), Expect = 1e-23
Identities = 43/46 (93%), Positives = 46/46 (100%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
QSKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVL
Sbjct: 61 QSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVL 106
Score = 105 bits (251), Expect = 2e-23
Identities = 54/111 (48%), Positives = 64/111 (57%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 267
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEA++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 268 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLTEAPLNPK 420
+ P LTEAPLNPK
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPK 115
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 105 bits (252), Expect = 1e-23
Identities = 43/46 (93%), Positives = 46/46 (100%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
QSKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVL
Sbjct: 61 QSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVL 106
Score = 105 bits (251), Expect = 2e-23
Identities = 54/111 (48%), Positives = 64/111 (57%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 267
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEA++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 268 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLTEAPLNPK 420
+ P LTEAPLNPK
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPK 115
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 105 bits (252), Expect = 1e-23
Identities = 43/46 (93%), Positives = 46/46 (100%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
QSKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVL
Sbjct: 61 QSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVL 106
Score = 105 bits (251), Expect = 2e-23
Identities = 54/111 (48%), Positives = 64/111 (57%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 267
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEA++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 268 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLTEAPLNPK 420
+ P LTEAPLNPK
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPK 115
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 103 bits (248), Expect = 4e-23
Identities = 54/111 (48%), Positives = 65/111 (58%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKX 267
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM +KD++VGDEA+A+
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARR 65
Query: 268 XXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLTEAPLNPK 420
+ P LTEAPLNPK
Sbjct: 66 GILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPK 116
Score = 98.3 bits (234), Expect = 2e-21
Identities = 38/46 (82%), Positives = 45/46 (97%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
Q++RGIL+LKYPIEHG+V+NWDDMEKIWHHTFYNELR+ PEEHP+L
Sbjct: 62 QARRGILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPIL 107
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 91.9 bits (218), Expect = 2e-19
Identities = 36/46 (78%), Positives = 44/46 (95%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
+++ GILTL YP+EHG+V+NWDDMEKIW+HTFY+ELRVAPEEHPVL
Sbjct: 16 EARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVL 61
Score = 29.9 bits (64), Expect = 0.73
Identities = 20/70 (28%), Positives = 25/70 (35%)
Frame = +1
Query: 211 MVGMGQKDSYVGDEARAKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQS 390
MVGM + D +VGD+A A+ + P
Sbjct: 1 MVGMNENDLFVGDDAEARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPV 60
Query: 391 CLTEAPLNPK 420
LTEAPLNPK
Sbjct: 61 LLTEAPLNPK 70
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 91.1 bits (216), Expect = 3e-19
Identities = 42/62 (67%), Positives = 46/62 (74%)
Frame = +3
Query: 207 RDGRYGTEGLLCRR*GQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 386
RDG E + G + R ILTLK P+EHGIV NWDDMEKIWH+TFYNELRV PEEHP
Sbjct: 35 RDGLNPNESYVGEE-GHANRDILTLKDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHP 93
Query: 387 VL 392
VL
Sbjct: 94 VL 95
Score = 60.9 bits (141), Expect = 3e-10
Identities = 37/106 (34%), Positives = 46/106 (43%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAKXXXXXX 282
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ +SYVG+E A
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVGEEGHANRDILTL 58
Query: 283 XXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCLTEAPLNPK 420
+ P LTEAP NPK
Sbjct: 59 KDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHPVLLTEAPYNPK 104
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 59.7 bits (138), Expect = 8e-10
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +3
Query: 273 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
L + YP+ +GIV NWDDME +W H FYNEL++ P + +L
Sbjct: 66 LDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKIL 105
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGD 249
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ KD VG+
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGE 57
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 57.2 bits (132), Expect = 4e-09
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 189
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVG 38
Score = 47.2 bits (107), Expect = 5e-06
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +3
Query: 261 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
+R + + P + GIVT+WD ++ +W H F N L + P EHP+L
Sbjct: 79 RRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPML 122
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 56.8 bits (131), Expect = 6e-09
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 189
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
Score = 45.6 bits (103), Expect = 1e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +3
Query: 261 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
+R + + PI+ GIV++WD ++ IW H F + L + P EHP+L
Sbjct: 85 RRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPML 128
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 279 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 383
L YPIEHG V +WD ME+ W +N LR PE+H
Sbjct: 86 LHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDH 120
Score = 35.9 bits (79), Expect = 0.011
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 100 ALVVDNGSGMCKAGFAGDDAPRAVFPSIV 186
A+V+DNG+G K GFAG+ P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 44.0 bits (99), Expect = 4e-05
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD 249
+V+DNG+ + G+AG+ PR VF +IV RPRH+ G+ + VGD
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKAT----GETVTIVGD 66
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 33.9 bits (74), Expect = 0.045
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -3
Query: 224 PIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 87
P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 290 PTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 32.7 bits (71), Expect = 0.10
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 195
+V+DNG G+ KAG G+ P V P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
Score = 31.9 bits (69), Expect = 0.18
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 279 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
++ PI+ G + N D +IW H F + L +AP +L
Sbjct: 61 VRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLL 98
>At1g16690.2 68414.m01999 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 273 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLPH 398
L++KY + H I + W + +IW L+ P + P+
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPPPVNDTNPY 219
>At1g16690.1 68414.m01998 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 273 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLPH 398
L++KY + H I + W + +IW L+ P + P+
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPPPVNDTNPY 219
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 288 PIEHGIVTNWDDMEKIWHHTFYNEL 362
PIE G++ +WD ME + + Y L
Sbjct: 57 PIERGLIRDWDAMEDLLRYVVYTGL 81
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 100 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGR 192
ALVVD GS KAG A D +P + PS + R
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR 34
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 200 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 78
WR P + + A+GA P + AL +PL+ ++ +S+ +
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFV 207
>At5g66360.2 68418.m08367 ribosomal RNA adenine dimethylase family
protein similar to SP|P41819 Dimethyladenosine
transferase (EC 2.1.1.-) (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) {Saccharomyces
cerevisiae}; contains Pfam profile PF00398: ribosomal
RNA adenine dimethylase family protein
Length = 380
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -2
Query: 246 SYIRVLLSHTDHHA-LMAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFVAHLEL 70
SY+ L+ D H+ P HDR G + E H G + +G + + +
Sbjct: 18 SYLSSLVFRRDSHSQARTKPDHDRRRRGYERDVRIEEKKEHDGLFLCKSKGQHLLTNTRI 77
Query: 69 V 67
+
Sbjct: 78 L 78
>At5g66360.1 68418.m08366 ribosomal RNA adenine dimethylase family
protein similar to SP|P41819 Dimethyladenosine
transferase (EC 2.1.1.-) (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) {Saccharomyces
cerevisiae}; contains Pfam profile PF00398: ribosomal
RNA adenine dimethylase family protein
Length = 352
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -2
Query: 246 SYIRVLLSHTDHHA-LMAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFVAHLEL 70
SY+ L+ D H+ P HDR G + E H G + +G + + +
Sbjct: 18 SYLSSLVFRRDSHSQARTKPDHDRRRRGYERDVRIEEKKEHDGLFLCKSKGQHLLTNTRI 77
Query: 69 V 67
+
Sbjct: 78 L 78
>At3g48860.2 68416.m05337 expressed protein
Length = 577
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 179 EGNTARGASSPAKPALHIPEPLSTTNAATSSSH 81
E + R AS+ KPA H P +S+T + +S+ +
Sbjct: 82 EDLSLRFASASLKPARHAPSSISSTGSNSSNGN 114
>At3g48860.1 68416.m05336 expressed protein
Length = 494
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 179 EGNTARGASSPAKPALHIPEPLSTTNAATSSSH 81
E + R AS+ KPA H P +S+T + +S+ +
Sbjct: 82 EDLSLRFASASLKPARHAPSSISSTGSNSSNGN 114
>At3g07870.1 68416.m00962 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 200 WRGLPTIEGNTARGASSPAKPA--LHIPEPL 114
WR + T G + +SSP KP LH P+
Sbjct: 55 WRSVLTQHGRLSSSSSSPTKPCLLLHCDSPI 85
>At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin
family protein / PAN domain-containing protein contains
Pfam profiles: PF01453 lectin (probable mannose
binding), PF00024 PAN domain
Length = 764
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 213
E++ A + + G G+C A +D + V I GR +GV+
Sbjct: 632 EDLEAKLTEYGFGLCAADKDVEDFGKTVLALITGRYEPEGVV 673
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,334,921
Number of Sequences: 28952
Number of extensions: 233778
Number of successful extensions: 729
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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