Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0081
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51430.1 68418.m06376 conserved oligomeric Golgi complex comp...    32   0.36 
At4g02720.1 68417.m00368 expressed protein temporary automated f...    32   0.36 
At1g77310.1 68414.m09004 wound-responsive protein, putative simi...    32   0.48 
At1g15940.1 68414.m01913 expressed protein similar To androgen-i...    29   2.6  
At5g52230.1 68418.m06483 expressed protein                             29   3.4  
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein...    29   3.4  
At1g56660.1 68414.m06516 expressed protein                             29   3.4  
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ...    29   4.5  
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    29   4.5  
At1g31870.1 68414.m03917 expressed protein                             29   4.5  
At5g51770.1 68418.m06419 protein kinase family protein contains ...    28   5.9  
At3g28770.1 68416.m03591 expressed protein                             28   5.9  
At3g17890.1 68416.m02279 expressed protein                             28   5.9  
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil...    28   5.9  
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    28   7.8  

>At5g51430.1 68418.m06376 conserved oligomeric Golgi complex
           component-related / COG complex component-related
           contains weak similarity to Conserved oligomeric Golgi
           complex component 7 (Swiss-Prot:P83436) [Homo sapiens]
          Length = 836

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -1

Query: 358 WRWCIFAWPSTTSTFT--LALDSRFFLGTFWSASTSLATG-ACSSSEDLAESFVLVAAGG 188
           W+WC+ A+P    T    L +++   LG  + +  +LATG A   ++ LA+  + + +G 
Sbjct: 291 WKWCMVAFPDDYMTLVPKLLVETMGVLGASFVSRLNLATGDAVPETKALAKGVMDLLSGD 350

Query: 187 RPR 179
            P+
Sbjct: 351 LPK 353


>At4g02720.1 68417.m00368 expressed protein temporary automated
           functional assignment
          Length = 422

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +3

Query: 93  DDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSS-DDEQAPVANEVEA 269
           DD S   E+KG+     + ++ ES  L+ R R   ++R+K   K S D +     +E ++
Sbjct: 90  DDNSKGKERKGK-----SDSESESDGLRSRKRKSKSSRSKRRRKRSYDSDSESEGSESDS 144

Query: 270 DQKVPRKKRESRARVK 317
           +++  R++R+S ++ K
Sbjct: 145 EEEDRRRRRKSSSKRK 160


>At1g77310.1 68414.m09004 wound-responsive protein, putative similar
           to wound-responsive protein 14.05 (GI:16506638)
           [Castanea sativa]
          Length = 699

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
 Frame = +3

Query: 84  TMSDDGSTVVEKKG-RGRPKANGTQPESKELKK---RGRPPAATRTKDSAKSSDDEQAPV 251
           T S     + +K G  GRPK +  +   + L+K     RPPAAT  +D+  SS   +  +
Sbjct: 326 TESKTSIQISKKSGSNGRPKYSTLEKAIRNLEKLVAESRPPAATENQDADISSQAVKRGL 385

Query: 252 ANEVEAD-QKVPRKKRESRARVKVEVVD 332
             +V+    KV R    S+  +  E+++
Sbjct: 386 PGDVKLHLAKVARIAYASQGEISGELIN 413


>At1g15940.1 68414.m01913 expressed protein similar To
           androgen-induced prostate proliferative shutoff
           associated protein (GI:4559410) [Homo sapiens]
          Length = 990

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +3

Query: 117 KKGRGRPKANGTQPESK-----ELKKRGRPPAATRTKDSAKSSDDEQAPVANEVE 266
           K+    PK++G + E+      ELK  G    A +   + + +D+E+  VA+EVE
Sbjct: 828 KEPNAEPKSDGEEQEAAKEPNAELKTDGENQEAAKELTAERKTDEEEHKVADEVE 882


>At5g52230.1 68418.m06483 expressed protein 
          Length = 746

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 108 VVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVANEV--EADQKV 281
           + ++  R + KA+ T+    +LK+      A   KDS  SS   Q P    V  E +++ 
Sbjct: 184 IAKRVTRSQTKASTTEEVVVDLKRNLSSSNAKSEKDSVNSSVRSQKPKKEAVMKEEEEQD 243

Query: 282 PRKKRESRARVK 317
             +KR +R++V+
Sbjct: 244 SSEKRITRSKVE 255


>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 275

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/49 (24%), Positives = 31/49 (63%)
 Frame = +3

Query: 159 ESKELKKRGRPPAATRTKDSAKSSDDEQAPVANEVEADQKVPRKKRESR 305
           ++K+ KK+ +     R + S+ SS+  ++  A++ ++D+   R+K++S+
Sbjct: 220 KAKKSKKKQKQRKERRRRYSSSSSESSESESASDSDSDEDRSRRKKKSK 268


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
 Frame = +3

Query: 96  DGSTVVEKKGRG----RPKANGTQPESKELK-KRGRPPAATRTKDSAKSSD-DEQAPVAN 257
           D S   EKK +     + K   T+ E K+LK K+G+     +  +  K+ + D      +
Sbjct: 256 DESCAEEKKKKPDKEKKEKDESTEKEDKKLKGKKGKGEKPEKEDEGKKTKEHDATEQEMD 315

Query: 258 EVEADQKVPRKKR-ESRARVKVEVVD 332
           +  AD K  +KK+ + +A+ K  V+D
Sbjct: 316 DEAADHKEGKKKKNKDKAKKKETVID 341


>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
           protein low similarity to tumor-rejection antigen SART3
           [Mus musculus] GI:7637845; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 817

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 165 KELKKRGRPPAATRTKDSAKSSDDEQAPVANEVEADQK 278
           KE  +RG    +  +KD +  S+  +AP+  E E ++K
Sbjct: 733 KEFTRRGNVDGSGNSKDPSLISEKAKAPLGGETEGERK 770


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
 Frame = +3

Query: 105 TVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAK-----SSDDEQAPVANEVEA 269
           TVV+        ++ ++ +S E +     P   + K S+K     SS DE +  +++ E+
Sbjct: 285 TVVKNAKPAAKDSSSSEEDSDEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESDKEES 344

Query: 270 -DQKVPRKKRESRARVKVEVVD 332
            D+KV  KK++S     VE+VD
Sbjct: 345 KDEKVTPKKKDS----DVEMVD 362


>At1g31870.1 68414.m03917 expressed protein
          Length = 561

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = +3

Query: 87  MSDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVANEVE 266
           +S D      +K + R  +   +PE+K L +   PP        ++ S  +++  + E++
Sbjct: 171 VSLDSDMSPPRKRKARNDSPSPEPEAKYLSEDLSPPRRRHVHSPSRESSRKRSD-SVELD 229

Query: 267 ADQKVPRKKRE 299
            D   PR+KR+
Sbjct: 230 DDLSPPRRKRD 240


>At5g51770.1 68418.m06419 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 654

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 165 KELKKRGRPPAATRTKDSAKSSDDEQAPVANEVEADQKVPRKKR 296
           KEL KR +     +T +S   SDD    V      D +V RKKR
Sbjct: 420 KELAKRMKKKKKKKTLESEFYSDDVSGSVDQRRHGDGEVYRKKR 463


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/78 (23%), Positives = 38/78 (48%)
 Frame = +3

Query: 90   SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVANEVEA 269
            S+D ++   +K     K + T+ E+K+ KK+ +       K   K S++ ++    E   
Sbjct: 1002 SEDSASKNREKKEYEEKKSKTKEEAKKEKKKSQD-----KKREEKDSEERKSKKEKEESR 1056

Query: 270  DQKVPRKKRESRARVKVE 323
            D K  +K+ E++ + + E
Sbjct: 1057 DLKAKKKEEETKEKKESE 1074


>At3g17890.1 68416.m02279 expressed protein
          Length = 153

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 144 NGTQPESKELKKRGRPPAATRTKD-SAKSSDDEQAPVANEVEADQK 278
           NG+QPE+ + K   RP    +TK+       DE   V  ++  + K
Sbjct: 21  NGSQPEAPKTKAEKRPKRVQKTKEKDLNLKSDEPKRVPRKIREEAK 66


>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
           to U2 small nuclear ribonucleoprotein auxiliary factor
           35 kD subunit related protein 1 (sp|Q15695)
          Length = 757

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 90  SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVANEVE 266
           SDD  +   +KG+ + + N  +   KE + R R    T+  D     + E+  V  E+E
Sbjct: 696 SDDPESDQSRKGKRQSEENSDRETHKERRHRHRKRRRTQNSDDQNPKESEE--VEEEIE 752


>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
           protein GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
 Frame = +3

Query: 90  SDDGSTVVEKKGRGRPKA---NGTQPESKELKKRGRPPAATR--TKDSAKSSDDEQA-PV 251
           S+D     +K      KA   + +  E  + +     PA  +  TK S KSS DE +   
Sbjct: 195 SEDEKPATKKAAPAAAKAASSSDSSDEDSDEESEDEKPAQKKADTKASKKSSSDESSESE 254

Query: 252 ANEVEADQKVPRKKRESRARVKVE 323
            +E E +++ P+KK      V  E
Sbjct: 255 EDESEDEEETPKKKSSDVEMVDAE 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,041,255
Number of Sequences: 28952
Number of extensions: 269248
Number of successful extensions: 989
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)