Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0072
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30600.1 68417.m04341 signal recognition particle receptor al...    48   7e-06
At5g58890.1 68418.m07378 MADS-box family protein various predict...    31   0.47 
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ...    29   1.9  

>At4g30600.1 68417.m04341 signal recognition particle receptor alpha
           subunit family protein similar to Signal recognition
           particle receptor alpha subunit (SR-alpha) (Docking
           protein alpha) (DP-alpha) (SP:P08240) [Homo sapiens};
           similar to Signal recognition particle receptor alpha
           subunit  (SR-alpha) (Docking protein alpha) (DP-alpha)
           (SP:P06625) [Canis familiaris};  contains Pfam PF04086:
           Signal recognition particle, alpha subunit, N-terminal;
           contains Pfam PF00448: SRP54-type protein, GTPase domain
          Length = 634

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
 Frame = +1

Query: 76  MLDLFSIFSKGGIVLW-CFQSTSEIFSPSVNALIRSVILQERSGNNTFNHNALTLQYKL 249
           ML+   IF++GG++LW C +  + +    ++ LIRS +L+ERSG  +FN++A    Y L
Sbjct: 1   MLEQLLIFTRGGLILWTCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDAPGAAYTL 59



 Score = 34.7 bits (76), Expect = 0.050
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +3

Query: 264 LVFVVAYQRILQLSYVDKFLNDVHLEFRDKY 356
           LVFV  YQRIL L YVD  L+ V   F + Y
Sbjct: 69  LVFVAVYQRILHLLYVDDLLSMVKQSFSEVY 99


>At5g58890.1 68418.m07378 MADS-box family protein various predicted
           proteins, Oryza sativa and Arabidopsis thaliana
          Length = 294

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 381 CIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFED--SQKSKKRLHL*SNAKEMRKGR 554
           C++ +      D V+ E EIW K + K+   +R ++D  S   +K  ++ +   ++ KG 
Sbjct: 44  CLIVYGPTKATDVVISEPEIWPKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGN 103

Query: 555 XLSK*SKVK 581
            +    +VK
Sbjct: 104 EVVTKKRVK 112


>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 304

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -3

Query: 481 VLICFGILACDFAHISHSFSTLSKVVLKLKSTIQGPVWSSFLYL 350
           +L+C  IL C  +H S   S L+   L L+S+   P+W  +LYL
Sbjct: 242 LLLCCNILTCLTSHTSVLSSNLALSNLLLQSSPSQPLW-LYLYL 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,647,425
Number of Sequences: 28952
Number of extensions: 253458
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)