Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0068
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78240.1 68414.m09118 dehydration-responsive protein-related ...    30   1.8  
At5g62440.1 68418.m07837 expressed protein                             29   4.1  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   4.1  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   4.1  
At2g45560.1 68415.m05665 cytochrome P450 family protein                29   4.1  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   5.4  
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi...    28   7.1  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    28   7.1  
At5g64090.1 68418.m08049 expressed protein                             27   9.4  

>At1g78240.1 68414.m09118 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 684

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 477 TRMNGLT-RFPLPYLLSSETTAKGTGLGESAGKEDP 581
           T  N LT RFP  +L S+++++K  G GE+    DP
Sbjct: 36  TENNNLTLRFPFGFLFSNQSSSKHGGGGENGFSADP 71


>At5g62440.1 68418.m07837 expressed protein
          Length = 202

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 357 LRQHPRGPSQCFVLIRQSDSPCPCQF*ADR*TAVDRIVPIAHETK 223
           +R HP   S+CF L+R+ D+     F       VD+I+P+    K
Sbjct: 129 VRTHPMWKSRCFFLVREDDTADDFSF----RKCVDQILPLPENMK 169


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -3

Query: 434 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 324
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -3

Query: 434 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 324
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At2g45560.1 68415.m05665 cytochrome P450 family protein
          Length = 512

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +2

Query: 14  GREADAAGAGSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPD 172
           GR+ +    G+GR  C    LA    ++M    LY F+  L K VL   LD D
Sbjct: 435 GRDYELTPFGAGRRICPGMPLAMKTVSLMLASLLYSFDWKLPKGVLSEDLDMD 487


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 175 RVRIQSET*DDFRECHIKYIQFLRPH 98
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
           to receptor kinase GI:498278 from [Petunia
           integrifolia]; contains protein kinase domain,
           Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 652

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 22/83 (26%), Positives = 34/83 (40%)
 Frame = -1

Query: 589 NSTGSSFPADSPKPVPLAVVSLDSR*GSGNLVNPFMRVTN*MTRHLATLRES*LLPPFTR 410
           N+    FP        L  V L     SG + +  +R++   T ++     S  +PP  +
Sbjct: 119 NNFSGEFPESLTSLHRLKTVVLSRNRFSGKIPSSLLRLSRLYTFYVQDNLFSGSIPPLNQ 178

Query: 409 ACLNFFTLTFRALGRNHIASTPA 341
           A L FF ++   L   HI  T A
Sbjct: 179 ATLRFFNVSNNQLS-GHIPPTQA 200


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 446 GSQMPRHLISDAHEWINEIPTSLSTI*RNHSQGNGLGRISGER 574
           G  +P + +SD +  INE+  +   I +   + NGL +  G+R
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKR 112


>At5g64090.1 68418.m08049 expressed protein 
          Length = 448

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 679 VSGFSATIARNRSPTYATXSHVSLQCQTRVNSTGSSFPADS 557
           VSGFS + A +R P ++    VS Q ++R+ S  S    DS
Sbjct: 39  VSGFSPSAAADRDPMHSWWESVSKQ-RSRILSLSSLLSGDS 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,769,943
Number of Sequences: 28952
Number of extensions: 287817
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)