Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0066
(854 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g42790.1 68416.m04474 PHD finger family protein contains PHD-... 54 1e-07
At5g20510.1 68418.m02437 PHD finger family protein contains Pfam... 53 3e-07
At2g02470.1 68415.m00186 PHD finger family protein contains Pfam... 53 3e-07
At1g14510.1 68414.m01720 PHD finger family protein contains Pfam... 52 4e-07
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 50 1e-06
At5g05610.2 68418.m00611 PHD finger family protein contains Pfam... 50 1e-06
At5g05610.1 68418.m00610 PHD finger family protein contains Pfam... 50 1e-06
At3g11200.2 68416.m01359 PHD finger family protein contains Pfam... 50 2e-06
At3g11200.1 68416.m01360 PHD finger family protein contains Pfam... 50 2e-06
At4g22140.1 68417.m03200 PHD finger family protein / bromo-adjac... 48 6e-06
At1g63490.1 68414.m07179 transcription factor jumonji (jmjC) dom... 46 2e-05
At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjac... 46 3e-05
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 42 4e-04
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 40 0.002
At1g33420.1 68414.m04137 PHD finger family protein contains Pfam... 39 0.005
At2g01810.1 68415.m00111 PHD finger family protein contains Pfam... 38 0.006
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 37 0.015
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi... 37 0.020
At3g24010.1 68416.m03016 PHD finger family protein contains Pfam... 36 0.034
At2g36720.1 68415.m04505 PHD finger transcription factor, putative 36 0.045
At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1... 35 0.060
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 35 0.060
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 35 0.079
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r... 34 0.14
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r... 34 0.14
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 34 0.14
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 34 0.14
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 33 0.18
At2g27980.1 68415.m03391 expressed protein 33 0.18
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 33 0.24
At2g21830.1 68415.m02594 DC1 domain-containing protein contains ... 33 0.24
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 32 0.56
At1g50620.1 68414.m05688 PHD finger family protein contains Pfam... 32 0.56
At1g32800.1 68414.m04043 PHD finger protein-related contains low... 32 0.56
At4g10940.1 68417.m01779 PHD finger family protein contains Pfam... 31 0.74
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 31 0.74
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 31 0.74
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 31 1.3
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 30 1.7
At3g48400.1 68416.m05283 DC1 domain-containing protein similar t... 30 1.7
At4g10600.1 68417.m01734 PHD finger family protein contains Pfam... 30 2.3
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 30 2.3
At5g57590.1 68418.m07195 aminotransferase class III family prote... 29 3.0
At5g36740.1 68418.m04402 PHD finger family protein 29 3.0
At5g36670.1 68418.m04388 PHD finger family protein 29 3.0
At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containi... 29 3.0
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden... 29 3.0
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 29 3.0
At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger) fa... 29 3.0
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 3.9
At3g14320.1 68416.m01811 zinc finger (C3HC4-type RING finger) fa... 29 3.9
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 29 5.2
At3g45840.1 68416.m04961 DC1 domain-containing protein contains ... 28 6.9
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam... 28 6.9
At1g74620.1 68414.m08642 zinc finger (C3HC4-type RING finger) fa... 28 6.9
At1g78540.1 68414.m09154 transcription factor-related weak simil... 28 9.1
At1g67220.1 68414.m07651 zinc finger protein-related similar to ... 28 9.1
>At3g42790.1 68416.m04474 PHD finger family protein contains
PHD-finger domain, INTERPRO:IPR001965
Length = 250
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 307 GQAYC-ICRSSDSS-RFMIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
G+ C C SD + F I CD CE+W+HG C+ I+ +++IK Y C C
Sbjct: 193 GETLCGACGDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSC 243
>At5g20510.1 68418.m02437 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 260
Score = 52.8 bits (121), Expect = 3e-07
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +1
Query: 340 SSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
S F I CD CE+W+HG+C+ I+ +++IK+Y C C
Sbjct: 216 SDEFWICCDMCEKWFHGECVKITPARAEHIKHYKCPTC 253
>At2g02470.1 68415.m00186 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 256
Score = 52.8 bits (121), Expect = 3e-07
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +1
Query: 340 SSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
+ F I CDACE+W+HG C+ I+ ++++IK+Y C C
Sbjct: 212 TDEFWICCDACEKWFHGKCVKITPAKAEHIKHYKCPTC 249
>At1g14510.1 68414.m01720 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 252
Score = 52.4 bits (120), Expect = 4e-07
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +1
Query: 349 FMIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
F I CDACE+W+HG C+ I+ ++++IK+Y C C
Sbjct: 210 FWICCDACEKWFHGKCVKITPAKAEHIKHYKCPSC 244
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 298 NQAGQAYC-ICRSSDSS-RFMIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
++ G+ C C S ++ F I CD CE W+HG C+ I+ +++IK Y C C
Sbjct: 195 DEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSC 248
>At5g05610.2 68418.m00611 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 50.4 bits (115), Expect = 1e-06
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 340 SSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
+ F I CD CE WYHG C+ I+ +++ IK Y C C
Sbjct: 197 NDEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPSC 234
>At5g05610.1 68418.m00610 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 50.4 bits (115), Expect = 1e-06
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 340 SSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
+ F I CD CE WYHG C+ I+ +++ IK Y C C
Sbjct: 197 NDEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPSC 234
>At3g11200.2 68416.m01359 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 233
Score = 50.0 bits (114), Expect = 2e-06
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 340 SSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
+ F I CD CE WYHG C+ I+ +++ IK Y C C
Sbjct: 189 NEEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPPC 226
>At3g11200.1 68416.m01360 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 246
Score = 50.0 bits (114), Expect = 2e-06
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 340 SSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
+ F I CD CE WYHG C+ I+ +++ IK Y C C
Sbjct: 202 NEEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPPC 239
>At4g22140.1 68417.m03200 PHD finger family protein / bromo-adjacent
homology (BAH) domain-containing protein contains Pfam
domain, PF00628: PHD-finger and PF01426: BAH domain
Length = 196
Score = 48.4 bits (110), Expect = 6e-06
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 316 YCICRSS-DSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCREEDPTLKTR 483
YC C + M+ C+ C++WYH C+ ++ E+K + ++ C C +D K++
Sbjct: 110 YCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCAECSSDDDVKKSQ 166
>At1g63490.1 68414.m07179 transcription factor jumonji (jmjC)
domain-containing protein similar to PLU-1 protein
(GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus
musculus]; similar to Retinoblastoma-binding protein 2
(RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam
PF02373: jmjC domain
Length = 1116
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 259 DLPERQSKITTLLNQAGQAYCICRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNY 438
+LP + L +CIC +SR M++C C EWYH C+ + R Y+ +
Sbjct: 990 NLPVHAEQELQSLRARSMLHCICLKPYNSRSMVSCSQCGEWYHTYCLKLHWRPKAYVCSA 1049
Query: 439 FC 444
C
Sbjct: 1050 CC 1051
>At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjacent
homology (BAH) domain-containing protein contains Pfam
domain, PF00628: PHD-finger and PF01426: BAH domain
Length = 228
Score = 46.0 bits (104), Expect = 3e-05
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 316 YCICRSS-DSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCREEDPTL 474
+C C + M+ C+ C EW+H CI + E+K N++C+ C + L
Sbjct: 141 FCKCEMPYNPDDLMVQCEECSEWFHPSCIGTTIEEAKKPDNFYCEECSPQQQNL 194
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 319 CICRS-SDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCREE 462
CICR+ D MI+CD CE W H C I + ++ + C C EE
Sbjct: 609 CICRARDDDGERMISCDVCEVWQHTRCCGIDDSDT-LPPLFVCSNCCEE 656
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 355 IACDACEEWYHGDCINISERESKYIK--NYFCDRCREEDPTLKTRFRPQ 495
+ CD C+ W H +C NI+ K ++ NY+C C+ + T Q
Sbjct: 367 VCCDGCDVWVHAECDNITNERFKELEHNNYYCPDCKVQHELTPTILEEQ 415
>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
profile: PF00628: PHD-finger
Length = 697
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 319 CICRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCRE 459
C + D R M+ACD C W+H CI I+ ++ K + C RC E
Sbjct: 608 CGTKDDDGER-MLACDGCGVWHHTRCIGINNADALPSK-FLCFRCIE 652
>At2g01810.1 68415.m00111 PHD finger family protein contains Pfam
profile: PF00628: PHD-finger
Length = 697
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 319 CICRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCREEDPTLKTR 483
C R D R M+ACDAC+ W+H C +I + E+ + C+ C + K R
Sbjct: 640 CGARDDDGER-MVACDACKVWHHTLCNSIEDDEA-VPSVFLCNMCYGDSLRSKKR 692
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 277 SKITTLLNQAGQAYCICRSSDSSRFMIACDACEEWYHGDCINISERESKYI--KNYFCDR 450
SK+T + G I DS + + CD C+ W H C IS + K + +Y+C
Sbjct: 407 SKLTKPKHVCGICKRIWNHLDSQSW-VRCDGCKVWIHSACDQISHKHFKDLGETDYYCPT 465
Query: 451 CR 456
CR
Sbjct: 466 CR 467
>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
finger family protein contains Pfam profiles: PF01448
ELM2 domain, PF00628 PHD-finger
Length = 631
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 325 CRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRC-REEDPTLKTRFR 489
C + M+ CD CEE YH C + ++ I + C C + + KT+ R
Sbjct: 415 CDKPGTVEKMLICDECEEAYHTRCCGVQMKDVAEIDEWLCPSCLKNQSSKTKTKGR 470
>At3g24010.1 68416.m03016 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 234
Score = 35.9 bits (79), Expect = 0.034
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 316 YCICRSSDSSRFMIACD--ACE-EWYHGDCINISERESKYIKNYFCDRCREEDPTLKTR 483
YCIC M+ACD AC+ EW+H C+ + E+ ++C C + K R
Sbjct: 180 YCICNQVSFGE-MVACDNNACKIEWFHFGCVGLKEQPK---GKWYCPECATVKKSRKGR 234
>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
Length = 1007
Score = 35.5 bits (78), Expect = 0.045
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 325 CRSSDSSRFMIACDACEEWYHGDCI---NISERESKYIKNYFCDR-CREEDPTLK 477
CRS R +I CD CE+ YH C+ NI + + N+FC C + TL+
Sbjct: 715 CRSGFGPRTIIICDQCEKEYHIGCLSSQNIVDLKELPKGNWFCSMDCTRINSTLQ 769
>At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1)
identical to male sterility 1 protein [Arabidopsis
thaliana] gi|15554513|emb|CAC69663 PMID:11696184;
contains Pfam profile PF00628: PHD-finger; identical to
cDNA male sterility 1 protein (ms1 gene) GI:15554514
Length = 672
Score = 35.1 bits (77), Expect = 0.060
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 319 CICRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
C D R M+ CD CE W H C+ + E + + + C C
Sbjct: 619 CGATEEDGER-MVCCDICEVWQHTRCVGVQHNE-EVPRIFLCQSC 661
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 35.1 bits (77), Expect = 0.060
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 325 CRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCR 456
C +S ++ CDACE +H C+N E+ ++ C CR
Sbjct: 89 CGRPESIELVVVCDACERGFHMSCVN-DGVEAAPSADWMCSDCR 131
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 34.7 bits (76), Expect = 0.079
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 355 IACDACEEWYHGDCINISERESKYIKNYFCDRCRE----EDPTLKTRFRPQKR 501
I C +C+ WYH + + + E + + + C RCR + P + + + QK+
Sbjct: 1259 IHCTSCDMWYHIEAVKLEESKIPEVVGFKCCRCRRIRSPDCPYMDPKLKEQKQ 1311
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = +1
Query: 325 CRSSDSSRFMIACDACEEWYHGDCINISERESKYIKN--YFCDRC--REEDPTL--KTRF 486
CR ++ CD C YH CI + + YI + ++C C ++ PT+ KT
Sbjct: 416 CRLCGMDGTLLCCDGCPLAYHSRCIGVVK---MYIPDGPWYCPECTIKKMGPTVVYKTSL 472
Query: 487 R 489
R
Sbjct: 473 R 473
>At5g35210.2 68418.m04175 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1409
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1
Query: 355 IACDACEEWYHGDCINISERESKYIKNYFCDRCRE----EDPTLKTRFRPQKRENGLILV 522
I C CE+W+H + + + + + + + C +CR + P + + + QK+ ++
Sbjct: 1122 IHCTKCEKWFHTEAVKLKDSQIPEVVGFKCCKCRRIRSPDCPYMDPKLKEQKQIKRIVFT 1181
Query: 523 EMIEK 537
++
Sbjct: 1182 NQKQR 1186
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +1
Query: 325 CRSSDSSRFMIACDACEEWYHGDCINISERESKYIKN--YFCDRC 453
CR ++ CD C YH CI + + YI + +FC C
Sbjct: 414 CRICGMDGTLLCCDGCPLAYHSRCIGVVK---MYIPDGPWFCPEC 455
>At5g35210.1 68418.m04174 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1576
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1
Query: 355 IACDACEEWYHGDCINISERESKYIKNYFCDRCRE----EDPTLKTRFRPQKRENGLILV 522
I C CE+W+H + + + + + + + C +CR + P + + + QK+ ++
Sbjct: 1122 IHCTKCEKWFHTEAVKLKDSQIPEVVGFKCCKCRRIRSPDCPYMDPKLKEQKQIKRIVFT 1181
Query: 523 EMIEK 537
++
Sbjct: 1182 NQKQR 1186
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +1
Query: 325 CRSSDSSRFMIACDACEEWYHGDCINISERESKYIKN--YFCDRC 453
CR ++ CD C YH CI + + YI + +FC C
Sbjct: 414 CRICGMDGTLLCCDGCPLAYHSRCIGVVK---MYIPDGPWFCPEC 455
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 322 ICRSSDSSRFMIACDACEEWYHGDCINISERESKYIK-----NYFCDRCREEDPTLK 477
+ R S+++ M+ CD C+ W H C IS+ + + Y C CR E +K
Sbjct: 305 VYRDSEATP-MVCCDFCQRWVHCQCDGISDEKYMQFQVDGNLQYKCSTCRGESYQVK 360
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +1
Query: 319 CICRS-SDSSRFM---IACDACEEWYHGDCINISER 414
CIC + S+S ++ + CD C+ W H DC+ S +
Sbjct: 397 CICGAVSESHKYKGVWVQCDLCDAWQHADCVGYSPK 432
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 325 CRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCR 456
C D M+ CD C+ H C+ + + N++C+ CR
Sbjct: 509 CHQGDDDGLMLLCDLCDSSAHTYCVGLGREVPE--GNWYCEGCR 550
>At2g27980.1 68415.m03391 expressed protein
Length = 1037
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +1
Query: 310 QAYCICRSSDSSRFMIACDACEEWYHGDCI---NISERESKYIKNYFCD-RCREEDPTL 474
+ + CR ++R +I CD CE+ +H C+ +I++ + + +FC C E + TL
Sbjct: 756 RGHSFCRLGFNARTVIICDQCEKEFHVGCLKERDIADLKELPEEKWFCSLGCEEINTTL 814
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = +1
Query: 322 ICRSSDSSRFMIACDACEEWYHGDCINISERESKYIK-------NYFCDRCREE 462
+ R S+S+ M+ CD C+ W H C IS + KY++ Y C CR E
Sbjct: 292 VYRDSESTP-MVCCDICQRWVHCHCDGIS--DDKYMQFQVDGKLQYKCATCRGE 342
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 334 SDSSRFMIACDACEEWYHGDCIN--ISERESKYIKNYFCDRCR 456
SD +R M++C C + YH +C+ R+ + ++ C CR
Sbjct: 159 SDRARRMLSCKDCGKKYHKNCLKSWAQHRDLFHWSSWSCPSCR 201
>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
Pfam profilePF03107: DC1 domain
Length = 569
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 361 CDACEEWYHGDCINISERESK---YIKNYFCDRCREEDPTLK 477
C CE +H +C+ IS+ SK +I C R REED +L+
Sbjct: 277 CIECELEFHFECLGISKTISKRSCHIHPLVCKRVREEDDSLE 318
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 31.9 bits (69), Expect = 0.56
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 361 CDACEEWYHGDCI-NISERESKYIKNYFCDR 450
C C YHG C+ IS+R + + YFC +
Sbjct: 789 CSQCAHKYHGTCLQGISKRRKLFPETYFCGK 819
>At1g50620.1 68414.m05688 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 629
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 322 ICRSS-DSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
IC+ + + ++ CDACE+ YH C++ + + C RC
Sbjct: 326 ICQGTINEIETVLICDACEKGYHLKCLHAHNIKGVPKSEWHCSRC 370
>At1g32800.1 68414.m04043 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 398
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 319 CICR-SSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCREEDPTLKTRFRPQ 495
C+C + D M+ CD C W H C E + + C +C+ ++ + +
Sbjct: 26 CVCGVNDDDGTEMVKCDDCGVWVHTRCSRFVEGQELFT----CHKCKSKNNVNDS----E 77
Query: 496 KRENGLILVEMIEKSSG 546
+ E +LVE+ K+ G
Sbjct: 78 ETEVAQLLVELPTKTLG 94
>At4g10940.1 68417.m01779 PHD finger family protein contains Pfam
profile: PF00097 zinc finger, C3HC4 type
Length = 192
Score = 31.5 bits (68), Expect = 0.74
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 355 IACDACEEWYHGDCI 399
IACD+C+ WYH C+
Sbjct: 155 IACDSCDMWYHAICV 169
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 31.5 bits (68), Expect = 0.74
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 352 MIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
++ CDACE+ YH C+ + + + C RC
Sbjct: 61 LLICDACEKAYHLKCLQGNNMKGVPKSEWHCSRC 94
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 31.5 bits (68), Expect = 0.74
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 352 MIACDACEEWYHGDCINISERESKYIKNYFCDRC 453
++ CDACE+ YH C+ + + + C RC
Sbjct: 322 LLICDACEKAYHLKCLQGNNMKGVPKSEWHCSRC 355
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Frame = +1
Query: 253 AFDLPERQSKITTLLNQAGQAYCICRSSDSSRFMIACDACEEWYHGDCINISERESKYIK 432
A D I T ++ C C+ S ++ CD C YH C+ ++
Sbjct: 590 ADDFSLNNEVIDTSFDRNSDDCCFCKMDGS---LLCCDGCPAAYHSKCVGLASHLLPE-G 645
Query: 433 NYFCDRCR--EEDPTLKTRFRPQKRENGLILVEM 528
+++C C P LK P K+ G +E+
Sbjct: 646 DWYCPECAFDRRAPGLK----PDKQIRGAEFIEI 675
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +1
Query: 316 YCICRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCREEDPTLK 477
Y C D ++ CD+C YH C+N + K + C +C LK
Sbjct: 61 YFECVICDLGGDLLCCDSCPRTYHTACLNPPLKRIPNGK-WICPKCSPNSEALK 113
>At3g48400.1 68416.m05283 DC1 domain-containing protein similar to
UV-B light insensitive ULI3 [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 619
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 283 ITTLLNQAGQAYC-ICRSSDSSRFMIACDACEEWYHGDCINIS 408
+ L Q + +C +C+ + + C C+ ++H +CINIS
Sbjct: 128 LVLLEKQVKKDHCGVCKKTVFGMYPYVCLECDVYFHVECINIS 170
>At4g10600.1 68417.m01734 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 237
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +1
Query: 319 CICRSS-DSSRFMIACDACEEWYHGDCINISERESKYIKN---YFCDRCR 456
C+C + D + M+ CD C W H C S+Y+K + C +C+
Sbjct: 16 CVCGVNFDDGKEMVDCDECGVWVHTWC-------SRYVKGDDLFVCHKCK 58
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 322 ICRSSDSSRFMIACDACEEWYHGDC 396
+C +R +ACD CE+ YH C
Sbjct: 245 LCGEKAEARDCLACDHCEDMYHVSC 269
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 319 CICRSSDSSRF---MIACDACEEWYHGDCINISERESKYIKNYFCDRCR 456
C+CR+ + + ++ CD C++ YH C+ ES +FC C+
Sbjct: 403 CLCRNCLTDKDDDKIVLCDGCDDAYHIYCMR-PPCESVPNGEWFCTACK 450
>At5g57590.1 68418.m07195 aminotransferase class III family protein
low similarity to 7,8-diaminopelargonic acid
aminotransferase BioA [Mesorhizobium loti] GI:12044306;
contains Pfam profile PF00202: aminotransferase, class
III
Length = 523
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 274 QSKITTLLNQAGQAYCICRSSDSSRFMIACDACEEWY 384
Q +T + ++ G+ + I ++SD+S DAC W+
Sbjct: 35 QETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWW 71
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 352 MIACDACEEWYHGDCINISERESK--YIKNYFCDRCREED 465
+I CD C +H C++I + S Y N C C +++
Sbjct: 662 LICCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKFCEKDE 701
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 352 MIACDACEEWYHGDCINISERESK--YIKNYFCDRCREED 465
+I CD C +H C++I + S Y N C C +++
Sbjct: 662 LICCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKFCEKDE 701
>At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 747
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 307 GQAYCICRSSDSSRFMIACDACEEWYHGDC 396
G+ ICRSS + + + C +C EW H C
Sbjct: 674 GECCLICRSSTAGDW-VNCGSCGEWAHFGC 702
>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
CREB-binding protein GB:S39162 from [Homo sapiens]
Length = 1670
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = +1
Query: 355 IACDACEEWYHGDCINISERESKYIKNYFCDRC 453
+ CD C+ W H C + R + Y C C
Sbjct: 1011 VQCDKCQAWQHQICALFNGRRNHGQAEYTCPNC 1043
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 29.5 bits (63), Expect = 3.0
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +1
Query: 322 ICRSSDSSRFMIACDACEEWYHGDCI 399
IC D + ++ C C++ +H DC+
Sbjct: 706 ICSGEDERKKLLHCSECDKLFHPDCV 731
>At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +1
Query: 343 SRFMIACDA-CEEWYHGDCINISERESKYIKNYFCDRCR 456
S F C A C W+ G+CI + R ++ C CR
Sbjct: 15 SHFTAPCQANCSHWFCGNCIMLVWRHGSTLQPCKCPLCR 53
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 259 DLPERQSKITTLLNQAGQAYCICRSSDSSR-FMIACDACEEWYHGDCI 399
D+PE TLL + + C + ++ F C C+ ++H DC+
Sbjct: 453 DIPETHHHKLTLLKERIEFDCDAKCGETGDGFAYKCPECDLFFHVDCV 500
>At3g14320.1 68416.m01811 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +1
Query: 319 CICRSSDSSRFMIACDACEEWYHGDCINISERESKYIKNYFCDRCREEDPTLKTRFRPQ 495
C+ +D + + +C+ W+H +CI +S N C CR+ ++R RP+
Sbjct: 91 CLSELADGDKARVL-PSCDHWFHVECI-----DSWLQSNSTCPICRKRVCLKQSRTRPE 143
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +1
Query: 259 DLPERQSKITTLLNQAGQAYC-ICRSSDSSRFMIACDACEEWYHGDCINISE 411
D P+R TL + C +C + C C H DCI+I +
Sbjct: 93 DQPKRHDHTLTLFPRQASLTCNVCGLVNKLHLTYVCSICNFAAHSDCIHIPQ 144
>At3g45840.1 68416.m04961 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 633
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +1
Query: 301 QAGQAYC--ICRSS-DSSRFMIACDACEEWYHGDCI 399
+A YC IC + D S++ CD C +H DC+
Sbjct: 486 KASGKYCCDICETEMDPSKWFYTCDDCVVTFHIDCV 521
>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 854
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Frame = +1
Query: 319 CI-CRSSDSS------RFMIACDACEEWYHGDCI 399
C+ CRS D S R +I CD CE+ YH C+
Sbjct: 575 CVFCRSHDFSIGKFDDRTVILCDQCEKEYHVGCL 608
>At1g74620.1 68414.m08642 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 249
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 370 CEEWYHGDCINISERESKYIK-NYFCDRCREEDP 468
C+ +HGDCIN K+++ N+ C CR P
Sbjct: 202 CDHEFHGDCIN------KWLQLNHMCPLCRSSIP 229
>At1g78540.1 68414.m09154 transcription factor-related weak
similarity to STAT protein (GI:2230824) and STATc
protein (GI:13235235) [Dictyostelium discoideum]
Length = 638
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 572 IFQENYNKRWLWRLPWVAYRIT 637
I QEN+ K W W P VAY I+
Sbjct: 540 ITQENFEKMWCWLFP-VAYSIS 560
>At1g67220.1 68414.m07651 zinc finger protein-related similar to
SP|Q09472 E1A-associated protein p300 {Homo sapiens},
SP|Q92793 CREB-binding protein {Homo sapiens}; contains
Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
PHD-finger, PF02135: TAZ zinc finger
Length = 1357
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 355 IACDACEEWYHGDC--INISERESKYIKNYFCDRCREED 465
+ C++CE+W H C N + E K Y C C E+
Sbjct: 729 VQCESCEKWQHQICGLYNKLKDEDK-TAEYICPTCLLEE 766
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,277,156
Number of Sequences: 28952
Number of extensions: 317682
Number of successful extensions: 1037
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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