Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0058
         (427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26190.1 68417.m03770 expressed protein                             27   4.0  
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative              27   5.3  
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)...    27   5.3  
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)...    27   5.3  
At1g16780.1 68414.m02016 vacuolar-type H+-translocating inorgani...    27   5.3  
At4g11530.1 68417.m01850 protein kinase family protein contains ...    26   9.3  
At1g53530.1 68414.m06072 signal peptidase I family protein conta...    26   9.3  

>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 352 QRSGWLQEDGCDSPGTQSTFTKTNL 426
           +RSG L +D C+ PG     T  NL
Sbjct: 182 ERSGELTQDSCEKPGAAQICTDPNL 206


>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
          Length = 427

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -2

Query: 264 LKFRICKQFVKYSVYLCNSQIPI 196
           L ++IC +FV++S YL ++++ +
Sbjct: 126 LAYQICNEFVRFSTYLPDTKVSV 148


>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 344

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -2

Query: 264 LKFRICKQFVKYSVYLCNSQIPI 196
           L ++IC +FV++S YL ++++ +
Sbjct: 43  LAYQICNEFVRFSTYLPDTKVSV 65


>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 427

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -2

Query: 264 LKFRICKQFVKYSVYLCNSQIPI 196
           L ++IC +FV++S YL ++++ +
Sbjct: 126 LAYQICNEFVRFSTYLPDTKVSV 148


>At1g16780.1 68414.m02016 vacuolar-type H+-translocating inorganic
           pyrophosphatase, putative similar to vacuolar-type
           H+-translocating inorganic pyrophosphatase GI:6901676
           from [Arabidopsis thaliana]
          Length = 802

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 189 SFKWVFDCYTGKRNTLQIVYIF*ISVFTMKIYIFFNKWL 305
           SF  +F  Y G R +  IV++F + + +  + ++  KW+
Sbjct: 53  SFGGIF--YMGARTSPIIVFVFVVCIISFMLSVYLTKWV 89


>At4g11530.1 68417.m01850 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 931

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 419 VFVNVLCVPGESQPSSCS 366
           VF+N +C+PG ++P +CS
Sbjct: 333 VFINGMCIPG-TKPETCS 349


>At1g53530.1 68414.m06072 signal peptidase I family protein contains
           similarity to SP|P28627 Mitochondrial inner membrane
           protease subunit 1 (EC 3.4.99.-) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00461: Signal
           peptidase I
          Length = 168

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 118 LLYLYSRKVDRENHLYPPSMLPTPVLNG 201
           LL++  R +    H++ PSMLPT  L G
Sbjct: 32  LLHVTDRYIISTTHVHGPSMLPTLNLTG 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,007,383
Number of Sequences: 28952
Number of extensions: 176742
Number of successful extensions: 347
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)