Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0056
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21080.1 68414.m02637 DNAJ heat shock N-terminal domain-conta...    31   0.67 
At1g76700.1 68414.m08925 DNAJ heat shock N-terminal domain-conta...    30   1.2  
At3g47760.1 68416.m05203 ABC transporter family protein probable...    29   1.5  
At3g47750.1 68416.m05202 ABC transporter family protein probable...    29   1.5  
At3g55950.1 68416.m06217 protein kinase family protein contains ...    28   4.7  
At5g37490.1 68418.m04515 U-box domain-containing protein similar...    27   6.2  
At4g08340.1 68417.m01378 Ulp1 protease family protein contains P...    27   8.3  

>At1g21080.1 68414.m02637 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|P39101 CAJ1
           protein [Saccharomyces cerevisiae]; contains Pfam
           profile PF00226 DnaJ domain;
          Length = 391

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +2

Query: 56  FTNTTQAQRVNVSNASYMVDRVGVLGFIFVTE 151
           FT+  +A+   +SNA+Y V+ +  +G+I+V +
Sbjct: 157 FTSNAEAEVTRLSNAAYGVEMLNTIGYIYVRQ 188


>At1g76700.1 68414.m08925 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|P39101 CAJ1
           protein, Saccharomyces cerevisiae; contains Pfam profile
           PF00226 DnaJ domain
          Length = 398

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 56  FTNTTQAQRVNVSNASYMVDRVGVLGFIFVTE 151
           F +  +A+   +SNA+Y VD +  +G+I+V +
Sbjct: 158 FISNAEAEVARLSNAAYGVDMLNTIGYIYVRQ 189


>At3g47760.1 68416.m05203 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 872

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 253 ISAHFFVCGISFFRFISYCIAFIAGFEC 170
           +S  F + G+ FFRF  Y I FI  F C
Sbjct: 351 VSELFLLVGLKFFRFNDYSIQFIFYFLC 378


>At3g47750.1 68416.m05202 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 944

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 253 ISAHFFVCGISFFRFISYCIAFIAGFEC 170
           +S  F + G+ FFRF  Y I FI  F C
Sbjct: 412 VSELFLLVGLKFFRFNDYSIQFIFYFLC 439


>At3g55950.1 68416.m06217 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           cytokinin-regulated kinase 1 [Nicotiana tabacum]
           gi|10998537|gb|AAG25966
          Length = 814

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 175 ECSDRIKKFRNENKT*HPHSVYHIARVRHIHTLRLCSVCE 56
           E + ++KKF+ E +T     +  ++R+ H H +RL   CE
Sbjct: 527 EVNAKMKKFQ-EKETAFDSEIAFLSRLHHKHLVRLVGYCE 565


>At5g37490.1 68418.m04515 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 435

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 480 LLTLFCEVI*HTWR*FFRGWFTVLFSRVRSFVMSPLTPLLKPQNLETDRILCPMTKK-TY 304
           +LT F ++  HT R   +GW     S +   + +P  PL+  +  E  R L   T++  Y
Sbjct: 78  VLTTFDQIPNHTIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDY 137

Query: 303 KK 298
           +K
Sbjct: 138 EK 139


>At4g08340.1 68417.m01378 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain
          Length = 988

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 52   LIHKHYTSATCECVERELYGRQ 117
            LIH H T    ECVE E+ G Q
Sbjct: 950  LIHTHATGGVTECVEFEVDGLQ 971


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,188,410
Number of Sequences: 28952
Number of extensions: 188143
Number of successful extensions: 414
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)