Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0051
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 50 2e-06
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 50 2e-06
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 50 2e-06
At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing prote... 45 6e-05
At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing prote... 34 0.089
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 34 0.089
At4g29890.1 68417.m04253 choline monooxygenase, putative (CMO-li... 33 0.21
At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing prote... 33 0.21
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein... 32 0.48
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ... 29 3.4
At4g05080.1 68417.m00754 F-box family protein contains Pfam PF00... 28 5.9
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 5.9
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ... 28 7.7
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 28 7.7
At1g45688.1 68414.m05202 expressed protein 28 7.7
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = +1
Query: 508 LLSIDALGQNLCVYRGEDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGT 687
++ I+ Q ++RGEDG CV C H L +G TV I+CP+H W ++ G
Sbjct: 235 MVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLG-TVNEGRIQCPYHGWEYSTDGE 293
Query: 688 ASVCPALILHQKAYRSGP 741
P+ L + +S P
Sbjct: 294 CKKMPSTKLLKVKIKSLP 311
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = +1
Query: 508 LLSIDALGQNLCVYRGEDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGT 687
++ I+ Q ++RGEDG CV C H L +G TV I+CP+H W ++ G
Sbjct: 235 MVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLG-TVNEGRIQCPYHGWEYSTDGE 293
Query: 688 ASVCPALILHQKAYRSGP 741
P+ L + +S P
Sbjct: 294 CKKMPSTKLLKVKIKSLP 311
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = +1
Query: 508 LLSIDALGQNLCVYRGEDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGT 687
++ I+ Q ++RGEDG CV C H L +G TV I+CP+H W ++ G
Sbjct: 235 MVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLG-TVNEGRIQCPYHGWEYSTDGE 293
Query: 688 ASVCPALILHQKAYRSGP 741
P+ L + +S P
Sbjct: 294 CKKMPSTKLLKVKIKSLP 311
>At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing protein
similar to Rieske iron-sulfur protein Tic55 from Pisum
sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 539
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 511 LSIDALGQNLCVYRGEDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTA 690
L + + + +Y+ +G RC + CPH A L+ G + G +EC +H W+F G
Sbjct: 103 LGLTVYDRQIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGR-LECLYHGWQFEGEGKC 161
Query: 691 SVCPAL 708
P L
Sbjct: 162 VKIPQL 167
>At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 559
Score = 34.3 bits (75), Expect = 0.089
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 571 RCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTASVCP 702
+ +D CPH A L+ G + ++C +H W FN +G + P
Sbjct: 121 KVMDDTCPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIP 164
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 34.3 bits (75), Expect = 0.089
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 571 RCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTASVCP 702
+ +D CPH A L+ G + ++C +H W FN +G + P
Sbjct: 121 KVMDDTCPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIP 164
>At4g29890.1 68417.m04253 choline monooxygenase, putative (CMO-like)
similar to Choline monooxygenase, chloroplast precursor
(EC 1.14.15.7) from {Amaranthus tricolor} SP|Q93XE1,
{Beta vulgaris} SP|O22553; contains Pfam Rieske [2Fe-2S]
domain PF00355
Length = 422
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 544 VYRGEDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGT 687
V R E+G C H A++ G R SC C +H W ++ +G+
Sbjct: 123 VCRDENGKIHAFHNVCSH-HASILASGNGRKSCFVCLYHGWTYSLSGS 169
>At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing protein
similar to lethal leaf-spot 1 from Zea mays
[gi:1935909]; contains Pfam PF00355 Rieske [2Fe-2S]
domain
Length = 537
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 526 LGQNLCV-YRGEDGLARCVDAYCPHLGANLAVGGTVRGSCIECPFHKWRFNAAGTASVCP 702
LG++L + + D D CPH A L+ G ++C +H W F G+ + P
Sbjct: 108 LGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIP 167
>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 276
Score = 31.9 bits (69), Expect = 0.48
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = -3
Query: 369 SKPTSVSSFL*KTGLIYDLYITYKIAENANIKVSIKIY*RSN*I--RVLMTQSLYSFGVA 196
S P+SV + TG DLY YK+ + NI +IK + +N +L++ + V
Sbjct: 125 SCPSSVCDY---TGSYKDLYAHYKLTHSTNIFWNIKRFRCANFFTTSMLISDKILIKRVH 181
Query: 195 EKCLLFLLSVRCRGTPC 145
EK L LL+V+C PC
Sbjct: 182 EKKL--LLAVQCFREPC 196
>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 721
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 14 DVYNTQKKNNN*FELNEIVVSNSNKQNGGSSTFSIRHHGSRLFEHGVPRHRTESRNNKH 190
D N NNN N ++S Q+ S S +HG L + PRH+ + + N+H
Sbjct: 18 DNENNNNNNNNGGTDNTNAGNDSGDQDFDSGNTSSGNHGEGLGNNQAPRHK-KKKYNRH 75
>At4g05080.1 68417.m00754 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 391
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 422 SRRMGSKLPPPYPNGWFAVAETRELKV 502
+ R G L PP+ +GW +++ RE K+
Sbjct: 217 AERFGKLLDPPFQHGWMSLSWVREEKL 243
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 481 GDREPPIGVGRGQFAAHPSGGLGATDPPP 395
G R PP+ + GQF A + +T PPP
Sbjct: 239 GGRSPPLPLPPGQFTAGNASFPSSTQPPP 267
>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 519
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 752 HHAPGPDRYAFWCNIRAGQTDA 687
HH G WC+I G+TDA
Sbjct: 442 HHGAGSSNGQLWCDICEGKTDA 463
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 408 VAPKPPDGWAANCPLPTPMGGSRSP 482
V P PP + +N LP P G S SP
Sbjct: 231 VPPPPPSSYPSNDHLPPPTGPSDSP 255
>At1g45688.1 68414.m05202 expressed protein
Length = 342
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 269 LTLMFAFSAILYVIYKSYISPVFYKKELTEVGFDH 373
+TL F + YV+ K + P FYKK ++ F+H
Sbjct: 291 MTLSFVVRSRAYVLGK-LVQPKFYKKIECDINFEH 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,157,246
Number of Sequences: 28952
Number of extensions: 421308
Number of successful extensions: 1303
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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