Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0048
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27380.1 68418.m03269 glutathione synthetase (GSH2) non-conse...    48   7e-06
At2g21070.1 68415.m02501 expressed protein                             28   8.3  

>At5g27380.1 68418.m03269 glutathione synthetase (GSH2)
           non-consensus AT donor splice site at exon 6, AC
           acceptor splice site at exon 7; identical to
           Swiss-Prot:P46416 glutathione synthetase, chloroplast
           precursor (Glutathione synthase) (GSH synthetase)
           (GSH-S) [Arabidopsis thaliana]
          Length = 478

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 20/33 (60%), Positives = 27/33 (81%)
 Frame = +2

Query: 5   NRQVGHMLRTKLADANEGGVAAGLGALDSPYLL 103
           N Q G+++RTK+A ++EGGVAAG G LDS YL+
Sbjct: 446 NEQSGYLMRTKIASSDEGGVAAGFGVLDSIYLI 478


>At2g21070.1 68415.m02501 expressed protein 
          Length = 483

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 255 GWTPYTSCGGVNDENLC-GGEK 193
           G  P TSCGG  +E +C GGE+
Sbjct: 247 GLNPKTSCGGTPEEMVCNGGEQ 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,684,899
Number of Sequences: 28952
Number of extensions: 311941
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)