Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0046
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49720.1 68418.m06157 endo-1,4-beta-glucanase KORRIGAN (KOR) ...    29   2.7  

>At5g49720.1 68418.m06157 endo-1,4-beta-glucanase KORRIGAN (KOR) /
           cellulase (OR16pep) identical to
           endo-1,4-beta-D-glucanase KORRIGAN [Arabidopsis
           thaliana] GI:3978258; similar to
           endo-1,4-beta-D-glucanase; cellulase GI:5689613 from
           [Brassica napus]; identical to cDNA cellulase (OR16pep) 
           GI:1022806
          Length = 621

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 388 VLMQFSSSTALTLCTYLPTLNNVSLTN 468
           +L  F + T++ +C+YLP  N  + TN
Sbjct: 402 ILRTFHNQTSIVMCSYLPIFNKFNRTN 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,045,407
Number of Sequences: 28952
Number of extensions: 275283
Number of successful extensions: 499
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)