Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0099
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein si...    30   1.7  
At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein si...    30   1.7  
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ...    28   5.1  
At1g07180.1 68414.m00764 pyridine nucleotide-disulphide oxidored...    28   6.8  
At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id...    27   9.0  

>At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase GI:1419374 from [Homo
           sapiens]
          Length = 1024

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 98  IKSHTVCITNLYVITKLSPTLCTLFYYLKYIKMNYCSLVSLKLENG 235
           +++ +V  T+L  +TK+ PTL   F     + ++YC    + L +G
Sbjct: 434 VEAESVVATSLAHLTKVDPTLNPTFQQCLLLNISYCPSSEVNLSDG 479


>At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein
           similar to alpha-mannosidase GI:1419374 from [Homo
           sapiens]
          Length = 921

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 98  IKSHTVCITNLYVITKLSPTLCTLFYYLKYIKMNYCSLVSLKLENG 235
           +++ +V  T+L  +TK+ PTL   F     + ++YC    + L +G
Sbjct: 434 VEAESVVATSLAHLTKVDPTLNPTFQQCLLLNISYCPSSEVNLSDG 479


>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
           family protein low similarity to Translation initiation
           factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
           aphidicola} SP|P46243, {Salmonella typhimurium}
           SP|P33321; contains Pfam profiles PF05198: Translation
           initiation factor IF-3 N-terminal domain, PF00707:
           Translation initiation factor IF-3 C-terminal domain
          Length = 520

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 408 IQKLRSFTYRLRHYEVCQVSKLLIKILRYG-RFFPLGYPSADSHKELRSNKNIELL 572
           I+++R FT ++   ++   S   +K++  G R   L  P  D HKEL   K +ELL
Sbjct: 166 IKEIR-FTPKIEAKDLKFKSDQALKLMESGYRVKCLAVPDKDKHKELEPEKLLELL 220


>At1g07180.1 68414.m00764 pyridine nucleotide-disulphide
           oxidoreductase family protein contains similarity to
           alternative NADH-dehydrogenase GI:3718005 from [Yarrowia
           lipolytica], SP|P32340 Rotenone-insensitive
           NADH-ubiquinone oxidoreductase, mitochondrial precursor
           (EC 1.6.5.3) (Internal NADH dehydrogenase)
           {Saccharomyces cerevisiae} ; contains Pfam profile
           PF00070: Pyridine nucleotide-disulphide oxidoreductase
          Length = 510

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 417 LRSFTYRLRHYEVCQVSKLLIKILR 491
           L SF  RLRHY + Q++K  +K++R
Sbjct: 290 LSSFDDRLRHYAIKQLNKSGVKLVR 314


>At2g38120.1 68415.m04679 amino acid permease, putative (AUX1)
           identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
          Length = 485

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 119 ITNLYVITKLSPTLCTLFYYLKYIKMNYCSLVSLKLENGWTDLASLLL 262
           +  LYV T   P+   +++      +++ +  SL  +N W D A +L+
Sbjct: 271 MATLYVFTLTIPSAAAVYWAFGDALLDHSNAFSLMPKNAWRDAAVILM 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,083
Number of Sequences: 28952
Number of extensions: 209839
Number of successful extensions: 415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)