Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0084
(833 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39870.1 68417.m05649 expressed protein hypothetical protein,... 50 3e-06
At2g05590.2 68415.m00595 expressed protein similar to nucleolar ... 44 1e-04
At5g06260.1 68418.m00700 nucleolar protein-related contains weak... 35 0.058
At1g33610.1 68414.m04160 leucine-rich repeat family protein cont... 32 0.41
At5g45510.1 68418.m05590 leucine-rich repeat family protein cont... 32 0.54
At5g14940.1 68418.m01753 proton-dependent oligopeptide transport... 32 0.54
At1g70730.1 68414.m08153 phosphoglucomutase, cytoplasmic, putati... 31 0.94
At3g02930.1 68416.m00288 expressed protein ; expression support... 31 1.2
At3g19750.1 68416.m02500 hypothetical protein 30 1.6
At3g01160.1 68416.m00020 expressed protein 30 2.2
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 29 5.0
At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kina... 29 5.0
At2g26190.1 68415.m03145 calmodulin-binding family protein conta... 29 5.0
At1g78110.1 68414.m09103 expressed protein 29 5.0
At4g27310.1 68417.m03918 zinc finger (B-box type) family protein... 28 6.6
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 28 6.6
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 28 6.6
At3g07960.1 68416.m00973 phosphatidylinositol-4-phosphate 5-kina... 28 6.6
At5g05480.1 68418.m00590 expressed protein 28 8.8
At2g44430.1 68415.m05525 DNA-binding bromodomain-containing prot... 28 8.8
>At4g39870.1 68417.m05649 expressed protein hypothetical protein,
Schizosaccharomyces cerevisae, Z99168
Length = 394
Score = 49.6 bits (113), Expect = 3e-06
Identities = 23/64 (35%), Positives = 38/64 (59%)
Frame = +1
Query: 247 GRHMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIMEC 426
G + ++ S + +++G G G+F L+LD +L G + +TYGN L +DF VK +E
Sbjct: 309 GANRFYTLCSKEFLALGGG-GRFALYLDSELLSGSSAYSETYGNSCLADSQDFDVKEVEL 367
Query: 427 WTFI 438
W F+
Sbjct: 368 WGFV 371
>At2g05590.2 68415.m00595 expressed protein similar to nucleolar
protein C7C (GI:13540302) [Rattus norvegicus]
Length = 303
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 247 GRHMYFIRGSNDNISIGAGDGKFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIMEC 426
G + Y++ N+ ++ G G G F L LD DL + +T+GNE L + +F +K +E
Sbjct: 234 GANRYYLMCMNEFLAFGGG-GNFALCLDEDLLKATSGPSETFGNECLASSTEFELKNVEL 292
Query: 427 WTF 435
W F
Sbjct: 293 WGF 295
>At5g06260.1 68418.m00700 nucleolar protein-related contains weak
similarity to nucleolar protein C7C (GI:13540302)
[Rattus norvegicus]
Length = 424
Score = 35.1 bits (77), Expect = 0.058
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 274 SNDNISIGAGDG----KFGLWLDGDLYLGRTQRCKTYGNEPLTTREDFIVKIMECWTFI 438
+++NI G G G FGL++ G+T C T+G+ L+ +++ECW +
Sbjct: 327 TSENIPNGIGFGGKINHFGLFISASFDQGQTFECTTFGSPSLSKTSRIQPEVIECWGIV 385
>At1g33610.1 68414.m04160 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 907
Score = 32.3 bits (70), Expect = 0.41
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -1
Query: 434 KVQHSMIFTMKSSRVVSGSLPYVLHRCVRPKYRSPSSHRPNFPSPAPIDILSLL 273
K+QH + ++ ++GS P L + + +Y ++R + P PA I +LSLL
Sbjct: 100 KLQHLSVISLGGHVNITGSFPKFLLQLPKLRYVDIQNNRLSGPLPANIGVLSLL 153
>At5g45510.1 68418.m05590 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 1222
Score = 31.9 bits (69), Expect = 0.54
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Frame = +2
Query: 89 QRIEEDTSPGAHGPVHADDAN---KETDSDNQSD---AKKEDNEQSQTVKTKFKYWGWTG 250
Q EE T G H A+D+ K+ D+D + + A KE+ E VKT+ K+
Sbjct: 265 QETEEATKSGEHAEGEANDSQSGEKKEDTDGEDEIRSADKEEPESQARVKTEEKHEKVVP 324
Query: 251 DTCISFVGATTIY 289
T G+T Y
Sbjct: 325 PTIDDLWGSTNTY 337
>At5g14940.1 68418.m01753 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 552
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 137 ADDANKETDSDNQSDAKKEDNEQSQTVKTKFKYWGWTGDTCISFVGATTI 286
AD + + D DN + E+ E KT+F W + G S +G T +
Sbjct: 139 ADQLDYDLDHDNDHEPSSENKEVKSNRKTQFFQWWYFGVCAGSLLGVTVM 188
>At1g70730.1 68414.m08153 phosphoglucomutase, cytoplasmic, putative
/ glucose phosphomutase, putative strong similarity to
SP|P93804 Phosphoglucomutase, cytoplasmic 1 (EC 5.4.2.2)
(Glucose phosphomutase 1) (PGM 1) {Zea mays}; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 585
Score = 31.1 bits (67), Expect = 0.94
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -3
Query: 609 TRSHYKNSDSTASKRRIDRFVKVSNFRSKVHKIIK 505
TR Y+N D+TA+K + VK+ + +V+KIIK
Sbjct: 448 TRYDYENVDATAAKELMGLLVKLQSSLPEVNKIIK 482
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 140 DDANKETDSDNQSDAKKEDNEQSQTVKTKFKYW 238
D N + + D + KKE + + +TV+ +FK W
Sbjct: 701 DGMNMKLEEDTEKKEKKERSPEDETVEVEFKMW 733
>At3g19750.1 68416.m02500 hypothetical protein
Length = 378
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 98 EEDTSPGAHGPVHADDANKETDSDNQSDAKKEDNEQSQ 211
EE S G + AD++ E+D++ S A+ E++ +++
Sbjct: 266 EESESDGENAEAEADESTTESDAEEDSSAQSEEDSEAK 303
>At3g01160.1 68416.m00020 expressed protein
Length = 380
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 95 IEEDTSPGAHGPVHADDANKETDSDNQSDAKKEDNEQSQTVKT 223
+++ P H V A +E +SD +KKE +E + TVK+
Sbjct: 300 LKQKEDPKGHEDVKAPKEKQELNSDGNLGSKKERHELTSTVKS 342
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 101 EDTSPGAHGPVHADDANKETDSDNQSDAKKEDNE 202
ED + G H V DD+ + D +Q + K+E+ E
Sbjct: 127 EDVNGGEHQKVIDDDSKEVNDGSSQENGKEENKE 160
>At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 772
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 301 GDGKFGLWLDGDLYLGRTQRCKTYGN 378
G GK+ LW DG +Y+G KT GN
Sbjct: 86 GHGKY-LWTDGCMYIGDWYNGKTMGN 110
>At2g26190.1 68415.m03145 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 532
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 338 RSPSSHRPNFPSPAPIDILSLLPRMKYMCLPS 243
R PS + P PSP P + + PR+ YM +PS
Sbjct: 495 RFPSPYGP-IPSPRPSPRVRVSPRLAYMGIPS 525
>At1g78110.1 68414.m09103 expressed protein
Length = 342
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 122 HGPVHADDANKETDSDNQSDAKKEDNEQSQTVKTKFKYW 238
H V +DD +E D D++ + E E+ + KT F W
Sbjct: 165 HADVTSDDDEEEDDDDDEEEEVVE-GEEEENSKTVFSKW 202
>At4g27310.1 68417.m03918 zinc finger (B-box type) family protein
zinc-finger protein S3574, Oryza sativa, PIR3:JE0113
Length = 223
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +2
Query: 71 SFLYSFQRIEEDTSPGAHGPVHADDANKETDSDNQSDAKKEDNEQSQTVKTKFKYWGWT 247
SF RI ED G + DD ++ D + D ++D+E + + + W+
Sbjct: 99 SFESEEDRIREDHGDGDDAESYDDDEEEDEDEEYSDDEDEDDDEDGDDEEAENQVVPWS 157
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 140 DDANKETDSDNQSDAKKEDNEQSQTVKTKFK 232
DD +++ D +++ D + +D+E + KTK K
Sbjct: 313 DDIDEDEDEEDEEDEEDDDDEDEEESKTKKK 343
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 140 DDANKETDSDNQSDAKKEDNEQSQTVKTK 226
+ NK+ + D+ D++ +D+ +S VKTK
Sbjct: 254 ESLNKDYEGDSTQDSRDQDDSESPPVKTK 282
>At3g07960.1 68416.m00973 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 715
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 301 GDGKFGLWLDGDLYLGRTQRCKTYG 375
G GK+ LW DG +Y+G R KT G
Sbjct: 43 GHGKY-LWTDGCMYVGDWHRGKTMG 66
>At5g05480.1 68418.m00590 expressed protein
Length = 608
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 241 MDGRHMYFIRGSNDNISIGAGDGKFGLWLD 330
+DG+ F G ND IS D LWLD
Sbjct: 348 LDGKSHEFAFGVNDGISYWLVDANLHLWLD 377
>At2g44430.1 68415.m05525 DNA-binding bromodomain-containing protein
contains Pfam domains, Pfam PF00439: Bromodomain and
PF00249: Myb-like DNA-binding domain
Length = 646
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 92 RIEEDTSPGAHGPVHADDANKETDSD-NQSDAKKEDNEQSQTVKTKFKYWG 241
R EE+ G++ ++ DD N + +D +ED + S T K++ + WG
Sbjct: 2 RKEEEEEAGSYN-MNVDDTNNNNNYICTDNDYIEEDEDNSNTKKSQTQAWG 51
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,256,053
Number of Sequences: 28952
Number of extensions: 318395
Number of successful extensions: 1179
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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