Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0081
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br...    89   2e-18
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br...    89   2e-18
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)            87   8e-18
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ...    81   7e-16
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate...    29   2.2  
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr...    29   3.0  
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4...    29   3.9  
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun...    29   3.9  
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac...    27   9.0  
At5g12280.1 68418.m01444 hypothetical protein                          27   9.0  
At3g15370.1 68416.m01949 expansin, putative (EXP12) similar to e...    27   9.0  

>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 40/78 (51%), Positives = 50/78 (64%)
 Frame = +1

Query: 22  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 201
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 202 VRYHTKVRAGRGFTLREI 255
           ++Y+ KVR G+GFTL E+
Sbjct: 62  LKYNMKVRTGKGFTLEEL 79



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 41/93 (44%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
 Frame = +3

Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANE 431
           +AAG+    A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++FP + +KV  G++  
Sbjct: 80  KAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTP 139

Query: 432 EERKLATQLRGPLMPVQQPAP-KSVASLSLKMK 527
           EE   ATQ++G  +P+ +  P   +  L+ +MK
Sbjct: 140 EELANATQVQGDYLPIVREKPTMELVKLTSEMK 172



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 512 ITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 613
           +T + K+FKA+  +R  R+  +  G RAKR  +A
Sbjct: 167 LTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEA 200


>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 40/78 (51%), Positives = 50/78 (64%)
 Frame = +1

Query: 22  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 201
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 202 VRYHTKVRAGRGFTLREI 255
           ++Y+ KVR G+GFTL E+
Sbjct: 62  LKYNMKVRTGKGFTLEEL 79



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 41/93 (44%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
 Frame = +3

Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANE 431
           +AAG+    A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++FP + +KV  G++  
Sbjct: 80  KAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTP 139

Query: 432 EERKLATQLRGPLMPVQQPAP-KSVASLSLKMK 527
           EE   ATQ++G  +P+ +  P   +  L+ +MK
Sbjct: 140 EELANATQVQGDYLPIVREKPTMELVKLTSEMK 172



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 512 ITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 613
           +T + K+FKA+  +R  R+  +  G RAKR  +A
Sbjct: 167 LTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEA 200


>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
          Length = 206

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 39/78 (50%), Positives = 50/78 (64%)
 Frame = +1

Query: 22  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 201
           K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 202 VRYHTKVRAGRGFTLREI 255
           ++Y+ KVRAG+GFTL E+
Sbjct: 62  LKYNMKVRAGKGFTLEEL 79



 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 36/76 (47%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
 Frame = +3

Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANE 431
           + AG+    A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + ++V  G++  
Sbjct: 80  KVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTP 139

Query: 432 EERKLATQLRGPLMPV 479
           EE   ATQ++G  MP+
Sbjct: 140 EELANATQVQGDYMPI 155



 Score = 31.5 bits (68), Expect = 0.56
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 512 ITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 613
           +T D K FKAY  +R  R+ A+  G RAKR  +A
Sbjct: 167 LTADLKAFKAYDKIRLERTNARHAGARAKRAAEA 200


>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
           ribosomal protein L13 (BBC1), Arabidopsis thaliana,
           gb:X75162
          Length = 206

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 37/78 (47%), Positives = 48/78 (61%)
 Frame = +1

Query: 22  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 201
           K NN+IPNGHF K W+ +VKT FNQPA + RR+  R               +RP+V   T
Sbjct: 2   KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61

Query: 202 VRYHTKVRAGRGFTLREI 255
           + Y+ KVRAG+GFTL E+
Sbjct: 62  LTYNMKVRAGKGFTLEEL 79



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 37/93 (39%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
 Frame = +3

Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK-GEANE 431
           +AAG+    A TIGI+VD  R+N+S+E  Q NVQR+K Y+A+L++FP+  + +K G++ +
Sbjct: 80  KAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQ 139

Query: 432 EERKLATQLRGPLMPVQQPAP-KSVASLSLKMK 527
           +E   ATQ++   MP+ +  P   +  L+  MK
Sbjct: 140 QELANATQVQVDHMPIVREMPTMELVKLTSDMK 172


>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
           CDPK-related contains TIGRFAM TIGR01557: myb-like
           DNA-binding domain, SHAQKYF class; contains Pfam
           PF00249: Myb-like DNA-binding domain; similar to CDPK
           substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
           crystallinum].
          Length = 626

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 152 ATALAFFILFCFLRYRRAGWLNQV 81
           A  L FFI FCF  YR +G+L  V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289


>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 298

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 402 KKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVASLSLK--MKRTSKLINT*EELAP 569
           K+   GE+ +  +KL++ + G   P    +PK   SL+ K   +R S+ +   +EL P
Sbjct: 172 KRSHTGESTQPSKKLSSGVTGKTKPKPTTSPKDPQSLAAKNRRERISERLKILQELVP 229


>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
           gb|AAF22524.1
          Length = 399

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 309 DLQQFQSFGQILGSILRP 256
           DL+  QS GQI+G +LRP
Sbjct: 52  DLKSLQSVGQIIGEVLRP 69


>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
           p42D, putative similar to 26S proteasome regulatory
           complex subunit p42D [Drosophila melanogaster]
           gi|6434958|gb|AAF08391
          Length = 399

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 309 DLQQFQSFGQILGSILRP 256
           DL+  QS GQI+G +LRP
Sbjct: 52  DLKSLQSVGQIIGEVLRP 69


>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
          Length = 692

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +2

Query: 593 AKRLKDAAENPDDVTKAPTA 652
           AK L DA E PD VT+AP A
Sbjct: 658 AKELVDAFELPDHVTRAPIA 677


>At5g12280.1 68418.m01444 hypothetical protein
          Length = 419

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 327 SVESLQINVQRIKEYRARLILFPKGKKVLKGEA 425
           +V+SL  NV  +KE  +  I FP  K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394


>At3g15370.1 68416.m01949 expansin, putative (EXP12) similar to
           expansin GI:11191999 from [Lycopersicon esculentum];
           alpha-expansin gene family, PMID:11641069
          Length = 252

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 297 FQSFGQILGSILRPYFTKSESSTGAYFSMVPNSW 196
           +QS G + G  L    T ++S T  + ++VP+SW
Sbjct: 205 WQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSW 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,788
Number of Sequences: 28952
Number of extensions: 291502
Number of successful extensions: 733
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)