Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0076
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43460.1 68418.m05313 lesion inducing protein-related similar...    32   0.37 
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    31   1.1  
At4g28706.3 68417.m04105 pfkB-type carbohydrate kinase family pr...    29   2.6  
At4g28706.2 68417.m04104 pfkB-type carbohydrate kinase family pr...    29   2.6  
At4g28706.1 68417.m04103 pfkB-type carbohydrate kinase family pr...    29   2.6  
At3g11200.2 68416.m01359 PHD finger family protein contains Pfam...    28   7.9  
At3g11200.1 68416.m01360 PHD finger family protein contains Pfam...    28   7.9  

>At5g43460.1 68418.m05313 lesion inducing protein-related similar to
           ORF, able to induce HR-like lesions [Nicotiana tabacum]
          Length = 154

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +1

Query: 34  RHLGLRLTSLLQSVSLFFILVFYIDIFSNT 123
           RH  L LT  LQSV+LF  L+F+I + ++T
Sbjct: 109 RHFSLLLTEFLQSVALFGALLFFIGMKNST 138


>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger (C3HC4 type RING
           finger) family protein low similarity to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 1648

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 569 WVVCYLARAWPHVRCVKGYMIVYYQRWQSVHLDKK 465
           WV C L  AW H  CV GY      +  S H+D+K
Sbjct: 412 WVQCDLCDAWQHADCV-GYSPKGKGKKDSQHIDEK 445


>At4g28706.3 68417.m04105 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 403

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -3

Query: 537 TCAMR*GIYDRLLSKVAICAFGQKNVIDMSIQ-IDLNIIVSFKEYGSKP 394
           TCA R G+  RL+SKVA  + G+  + ++    +D + IV  KE G+ P
Sbjct: 93  TCAARLGLNSRLISKVANDSQGKGMLEELEADGVDTSFIVVSKE-GNSP 140


>At4g28706.2 68417.m04104 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 404

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -3

Query: 537 TCAMR*GIYDRLLSKVAICAFGQKNVIDMSIQ-IDLNIIVSFKEYGSKP 394
           TCA R G+  RL+SKVA  + G+  + ++    +D + IV  KE G+ P
Sbjct: 93  TCAARLGLNSRLISKVANDSQGKGMLEELEADGVDTSFIVVSKE-GNSP 140


>At4g28706.1 68417.m04103 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 401

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -3

Query: 537 TCAMR*GIYDRLLSKVAICAFGQKNVIDMSIQ-IDLNIIVSFKEYGSKP 394
           TCA R G+  RL+SKVA  + G+  + ++    +D + IV  KE G+ P
Sbjct: 91  TCAARLGLNSRLISKVANDSQGKGMLEELEADGVDTSFIVVSKE-GNSP 138


>At3g11200.2 68416.m01359 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 233

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 593 GHMWKSR*WVVCYLARAWPHVRCVK 519
           GH      W+ C +   W H +CVK
Sbjct: 185 GHYTNEEFWICCDVCERWYHGKCVK 209


>At3g11200.1 68416.m01360 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 246

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 593 GHMWKSR*WVVCYLARAWPHVRCVK 519
           GH      W+ C +   W H +CVK
Sbjct: 198 GHYTNEEFWICCDVCERWYHGKCVK 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,993,248
Number of Sequences: 28952
Number of extensions: 359486
Number of successful extensions: 712
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)