Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0074
         (815 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19660.1 68415.m02297 DC1 domain-containing protein contains ...    29   4.9  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    28   6.4  
At4g01170.1 68417.m00155 hypothetical protein                          28   8.5  
At2g14390.1 68415.m01608 hypothetical protein                          28   8.5  

>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 662

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 191 CIAVSRPDLYRSHKYPLTLQKVRYYSCEERCSKFKNESPIVFECSE 328
           C ++  P +++SH++PL   K    SC E C K  +     F C E
Sbjct: 473 CGSIREPLVHQSHQHPLYFSKRSSKSCTE-CGKNMDLDIGSFSCDE 517


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 191 CIAVSRPDLYRSHKYPLTLQKVRYYSCEERCSKFKNESPIVFECSE 328
           C  VS P ++ SH +PL L    Y +    CS  K ES ++    E
Sbjct: 523 CAVVSEPLVHESHMHPLFLTSEPYEA--RLCSVCKKESWLLLSTKE 566


>At4g01170.1 68417.m00155 hypothetical protein 
          Length = 444

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = +2

Query: 245 LQKVRYYSCEERCSKFKNESPI 310
           ++K++ +SC+ + SK +NE+P+
Sbjct: 57  IRKLKIFSCDSKISKLENENPM 78


>At2g14390.1 68415.m01608 hypothetical protein
          Length = 262

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 280 MFEIQE*IANCFRVFGKNRNHPSFVIHSTDCSCLIPLHPY--LPSQSLVKLGCISDSFTL 453
           +F ++E +A+C R  GKN      V+ S D S    +  Y      ++VK+  + DS+ L
Sbjct: 145 IFLLRE-LADCQREAGKNHMSDFKVLFSNDLSSAAQIKKYEDKAKATMVKIKNLEDSYKL 203

Query: 454 SSKT 465
            ++T
Sbjct: 204 LTET 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,210,878
Number of Sequences: 28952
Number of extensions: 321243
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)