Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0067
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00060.1 68417.m00006 nucleotidyltransferase family protein c...    29   2.6  
At1g72460.1 68414.m08379 leucine-rich repeat transmembrane prote...    28   6.0  
At2g02680.1 68415.m00207 DC1 domain-containing protein contains ...    28   7.9  
At1g42460.1 68414.m04896 Ulp1 protease family protein contains P...    28   7.9  
At1g23090.1 68414.m02887 sulfate transporter, putative similar t...    28   7.9  
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica...    28   7.9  

>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
           contains Pfam profile: PF01909 nucleotidyltransferase
           domain
          Length = 839

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 576 WHHGTVKSSVPEDFRGRVSVHEARKTSGLPISPVITSFCSPAMPTG 439
           WH   +K SV +     V+   +   +GL  SP   SFCSP  P G
Sbjct: 203 WHEAEMKRSVDD----MVAFSSSYSANGLD-SPTAASFCSPFHPLG 243


>At1g72460.1 68414.m08379 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat (5 copies), PF00069 eukaryotic protein
           kinase domain
          Length = 644

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 404 LTNGAWLDPVRTPVGIAGEQNEVITGEMGRPLVLRASCT----DTRPRKSSGTEDLTV 565
           L  G W+D +   V  A  +++++  E+   L +   CT    D RP  +   ++LT+
Sbjct: 575 LEQGGWMDLLHPMVVTAAAEDKIMEEEIENVLRIGVRCTREDPDQRPNMTEVVDELTI 632


>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 649

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 571 VPYSSTLYEARENVLLIRQLIDEALGEYACQAYNG 675
           + ++S+L + + +  + RQ +D   G Y C A NG
Sbjct: 290 ISFTSSLLKGKWSCGVCRQEVDRKYGAYTCNACNG 324


>At1g42460.1 68414.m04896 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 762

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 523 YPTPEIFWYRGLNGPMVPYSSTLYEARENVLLIRQLID 636
           YP  +    RG  G  +PY STL+   E+V + R  +D
Sbjct: 104 YPKVQKKKKRGTGGKQMPYYSTLFGLEEDVTVERAHLD 141


>At1g23090.1 68414.m02887 sulfate transporter, putative similar to
           sulfate transporter [Arabidopsis thaliana] GI:2285885;
           contains Pfam profiles PF00916: Sulfate transporter
           family, PF01740: STAS domain
          Length = 631

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = +2

Query: 227 YRNTYNFRNVKTITNFSFVSVQNAIRFLEYELITLTSSLWM 349
           YR+ ++++  + I  F  +S+++ + F     +T  +S W+
Sbjct: 492 YRDLHHYKEAQRIPGFLVLSIESPVNFANSNYLTERTSRWI 532


>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
           to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
           GI:21427461; contains Pfam profile PF00022: Actin
          Length = 427

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -2

Query: 612 NVFSGFVQCTAVWHHGTVKSSVPEDF 535
           NV S  VQ  AVW  G+V SS PE F
Sbjct: 375 NVVSHPVQRFAVWFGGSVLSSTPEFF 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,908,430
Number of Sequences: 28952
Number of extensions: 366343
Number of successful extensions: 1033
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)