Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0066
(557 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25520.1 68417.m03680 transcriptional co-regulator family pro... 33 0.13
At1g56040.1 68414.m06434 U-box domain-containing protein contain... 31 0.52
At1g48310.1 68414.m05396 SNF2 domain-containing protein / helica... 29 2.1
At4g23780.1 68417.m03420 hypothetical protein 29 2.8
At5g13100.1 68418.m01501 expressed protein 28 3.7
At2g36200.1 68415.m04444 kinesin motor protein-related 28 3.7
At4g25515.1 68417.m03679 transcriptional co-regulator family pro... 28 4.9
At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family pr... 28 4.9
At5g39750.1 68418.m04815 MADS-box family protein contains Pfam p... 27 6.4
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 27 6.4
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 27 6.4
At4g39170.1 68417.m05547 SEC14 cytosolic factor, putative / phos... 27 6.4
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ... 27 6.4
At2g37630.1 68415.m04616 myb family transcription factor (MYB91)... 27 6.4
At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TO... 27 8.5
At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TO... 27 8.5
At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TO... 27 8.5
At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1) domain... 27 8.5
At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1) domain... 27 8.5
At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1) domain... 27 8.5
At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1) domain... 27 8.5
At1g48900.1 68414.m05478 signal recognition particle 54 kDa prot... 27 8.5
>At4g25520.1 68417.m03680 transcriptional co-regulator family
protein contains similarity to GP|18033922|gb|AAL57277
SEUSS transcriptional co-regulator [Arabidopsis
thaliana]
Length = 748
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 171 QDSAQGGEHRGTPQCQPRKGT*PH--GEAPDQLQLHQFLQDCDELGEWVQEK 320
Q G PQ P + PH G P+Q LHQ LQ+ E G VQ++
Sbjct: 624 QQRTMNGPTNILPQNHPHQLQSPHSHGNTPEQQMLHQLLQEMSENGGSVQQQ 675
>At1g56040.1 68414.m06434 U-box domain-containing protein contains
Pfam profile PF04564: U-box domain
Length = 437
Score = 31.1 bits (67), Expect = 0.52
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +1
Query: 28 PPTNLEQAENIIKEHEAFLTTMEANDDKINSVVQFANRLVE-ERHFDAD-KIQRKAENIE 201
PP + A N+ + L +D+K N +V+ ++R+VE E +++ + K++++AE+
Sbjct: 104 PPERITDAMNLFRSIIGKLADFHFSDEKFNQLVR-SSRVVELEGNYNEEVKLRKEAEDAL 162
Query: 202 ARRNANREKALNLME 246
A + + E L+E
Sbjct: 163 AMKKEDVEMMEQLLE 177
>At1g48310.1 68414.m05396 SNF2 domain-containing protein / helicase
domain-containing protein contains similarity to
DNA-dependent ATPase A GI:6651385 from [Bos taurus]};
contains PFam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2
Length = 673
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 22 TEPPTNLEQAENIIKEHEAFLTTMEANDDKINSVVQFANRLVEERH 159
T P ++L AENI++E + +E D + + A+R+ + RH
Sbjct: 114 TFPHSSLSSAENILREISSVKVEIENLDPLVQRAIASASRVPDLRH 159
>At4g23780.1 68417.m03420 hypothetical protein
Length = 148
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/69 (20%), Positives = 34/69 (49%)
Frame = +1
Query: 4 EHRLAKTEPPTNLEQAENIIKEHEAFLTTMEANDDKINSVVQFANRLVEERHFDADKIQR 183
+H + K + + + + EN++KEHE + T+E + ++ + E ++I++
Sbjct: 24 QHEIWKEKYESLVTEHENLVKEHETLIKTLELIEKHEITLEDLVKKKQREALVGKEEIEK 83
Query: 184 KAENIEARR 210
+ I R+
Sbjct: 84 FDKEIGERK 92
>At5g13100.1 68418.m01501 expressed protein
Length = 354
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 267 LHQFLQDCDELGEWVQEKNVTAQDDTYRSAKTIHSKWTRHQAFEAEIAANKERLFAVQNA 446
+ +FL+D E +EK V + + + S W H E ++ A K+ ++ +A
Sbjct: 137 VRRFLEDFRSASE--EEKEVITDAIRHMYSPDLKSGWGIHIVQEEKLLAKKDERESLDSA 194
Query: 447 AEELMK 464
EEL++
Sbjct: 195 IEELLQ 200
>At2g36200.1 68415.m04444 kinesin motor protein-related
Length = 1056
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 94 EANDDKINSVVQFANRLVEERHFDADKIQRKAENI 198
EAND +INS++ F + D DK+ N+
Sbjct: 709 EANDSQINSIIDFQKTYEAQSKSDTDKLIADLTNL 743
>At4g25515.1 68417.m03679 transcriptional co-regulator family
protein contains similarity to GP|18033922|gb|AAL57277
SEUSS transcriptional co-regulator [Arabidopsis
thaliana]
Length = 471
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 207 PQCQPRKGT*PH--GEAPDQLQLHQFLQDCDELGEWVQEK 320
PQ P + PH G +Q LHQ LQ+ E G V+++
Sbjct: 359 PQNHPHQLQSPHSHGNTQEQQMLHQLLQEMTENGASVEQQ 398
>At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 253
Score = 27.9 bits (59), Expect = 4.9
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 199 EARRNANREKALNLMEKLQTSFSCTSSCRTATNLENGFRR-RTLPHKTIPTAPPRLSTLS 375
EA R RE+ + + KL+ SC S AT L +R R L +T+ T+ + L
Sbjct: 73 EAERR-RRERINSHLNKLRNVLSCNSKTDKATLLAKVVQRVRELKQQTLETSDSDQTLLP 131
Query: 376 GPVIRLSKLKLRPTKND 426
+S L ND
Sbjct: 132 SETDEISVLHFGDYSND 148
>At5g39750.1 68418.m04815 MADS-box family protein contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); MADS-box protein
AGL81
Length = 355
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 188 ALR*ILSASKCLSSTRRLANCTTELILSSLASIVVRKAS--CSLIIFSACSKFVG 30
A+R + S+S+C SS+ + LS+ + +KAS C+L AC + G
Sbjct: 2 AIRSLPSSSRCSSSSSSSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYG 56
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 52 ENIIKEHEAFLTTMEANDDKINSVVQFANRLVEERHF 162
E++I EH + TM DD V++ +R + + F
Sbjct: 208 ESVILEHPSTFETMAMEDDLKRDVIEDLDRFIRRKEF 244
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 52 ENIIKEHEAFLTTMEANDDKINSVVQFANRLVEERHF 162
E++I EH + TM DD V++ +R + + F
Sbjct: 208 ESVILEHPSTFETMAMEDDLKRDVIEDLDRFIRRKEF 244
>At4g39170.1 68417.m05547 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus] and
phosphatidylinositol-phosphatidylcholine transfer
protein SEC14, Yarrowia lipolytica, PIR2:S43745;contains
Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus
Length = 614
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 267 LHQFLQDCDELGEWVQEKNVTAQDDTYRSAKTIHSKWTRHQAFEAEIAANKERLFAVQNA 446
L+ L+ EL E + + Y + +++ R A EAE+ A K+ L+
Sbjct: 527 LNSVLKKLTELEEKIGALQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALYEALMR 586
Query: 447 AEELM 461
EEL+
Sbjct: 587 QEELL 591
>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1720
Score = 27.5 bits (58), Expect = 6.4
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 324 VTAQDDTYRSAKTIHSKWTRHQAFEAEIAANKERLFAVQNAAEELMKQKPEFVEVISPKM 503
+TA A+++ K T + F+ E+A +K L A ++ P VI+P +
Sbjct: 874 ITAHKHEMPPARSL-KKQTSMRLFDKEVADSKTSLLAEEDKPMGTFVMNPPGPFVINPVV 932
Query: 504 HDSKIN 521
H K N
Sbjct: 933 HQEKQN 938
>At2g37630.1 68415.m04616 myb family transcription factor (MYB91)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 367
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 178 QRKAENIEARRNANREKALNLMEKLQTSF 264
+ K E IEA+ A RE+ N MEK++ +
Sbjct: 295 REKMEEIEAKMKALREEQKNAMEKIEGEY 323
>At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 487
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/67 (20%), Positives = 30/67 (44%)
Frame = +1
Query: 37 NLEQAENIIKEHEAFLTTMEANDDKINSVVQFANRLVEERHFDADKIQRKAENIEARRNA 216
N+E ++I + T + +DDK+ + + EE D I K ++++ +
Sbjct: 215 NMEDHQDIGESKSVDTTNRKLDDDKVVVKEERGDSEKEEEGETGDLISEKTDSVDIHKKE 274
Query: 217 NREKALN 237
+ K +N
Sbjct: 275 DETKPIN 281
>At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/67 (20%), Positives = 30/67 (44%)
Frame = +1
Query: 37 NLEQAENIIKEHEAFLTTMEANDDKINSVVQFANRLVEERHFDADKIQRKAENIEARRNA 216
N+E ++I + T + +DDK+ + + EE D I K ++++ +
Sbjct: 215 NMEDHQDIGESKSVDTTNRKLDDDKVVVKEERGDSEKEEEGETGDLISEKTDSVDIHKKE 274
Query: 217 NREKALN 237
+ K +N
Sbjct: 275 DETKPIN 281
>At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/67 (20%), Positives = 30/67 (44%)
Frame = +1
Query: 37 NLEQAENIIKEHEAFLTTMEANDDKINSVVQFANRLVEERHFDADKIQRKAENIEARRNA 216
N+E ++I + T + +DDK+ + + EE D I K ++++ +
Sbjct: 215 NMEDHQDIGESKSVDTTNRKLDDDKVVVKEERGDSEKEEEGETGDLISEKTDSVDIHKKE 274
Query: 217 NREKALN 237
+ K +N
Sbjct: 275 DETKPIN 281
>At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 259 SFSCTSSCRTATNLENGFRRRTLPHKTIPTAPPRLSTLS 375
S + TSS T ++ + R +L +P +PPR++T++
Sbjct: 132 SSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPPRITTVT 170
>At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 218
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 259 SFSCTSSCRTATNLENGFRRRTLPHKTIPTAPPRLSTLS 375
S + TSS T ++ + R +L +P +PPR++T++
Sbjct: 154 SSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPPRITTVT 192
>At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 259 SFSCTSSCRTATNLENGFRRRTLPHKTIPTAPPRLSTLS 375
S + TSS T ++ + R +L +P +PPR++T++
Sbjct: 132 SSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPPRITTVT 170
>At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 259 SFSCTSSCRTATNLENGFRRRTLPHKTIPTAPPRLSTLS 375
S + TSS T ++ + R +L +P +PPR++T++
Sbjct: 132 SSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPPRITTVT 170
>At1g48900.1 68414.m05478 signal recognition particle 54 kDa protein
3 / SRP54 (SRP-54C) identical to SP|P49967 Signal
recognition particle 54 kDa protein 3 (SRP54)
{Arabidopsis thaliana}
Length = 495
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/90 (23%), Positives = 41/90 (45%)
Frame = -3
Query: 273 GATEAGLELLHEVKCLFAVGIAACLDVLRLALNLVRVEVPLLDEAISELHN*INLIVISL 94
G ++ + V + + CL+ + AL V PL+ E S + +NL ++
Sbjct: 8 GRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAA 67
Query: 93 HRSEEGLVFLDNIFSLFQVCRRLGFGEPVF 4
++ ++ IFS ++C+ L G+P F
Sbjct: 68 GHNKRRII-EQAIFS--ELCKMLDPGKPAF 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,170,524
Number of Sequences: 28952
Number of extensions: 240831
Number of successful extensions: 1006
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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