Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0064
(790 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 220 1e-57
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 208 4e-54
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 208 4e-54
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 160 1e-39
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 160 1e-39
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 160 1e-39
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 155 3e-38
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 150 1e-36
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 148 5e-36
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 145 3e-35
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 119 3e-27
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 116 1e-26
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 115 4e-26
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 110 1e-24
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 106 2e-23
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 102 3e-22
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 101 7e-22
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 96 2e-20
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 96 2e-20
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 91 8e-19
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 89 3e-18
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 87 1e-17
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 85 7e-17
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 80 2e-15
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 79 4e-15
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 76 3e-14
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 75 7e-14
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 73 2e-13
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 73 2e-13
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 70 2e-12
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 70 2e-12
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 69 5e-12
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 68 6e-12
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 68 8e-12
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 68 8e-12
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 67 1e-11
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 64 1e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 64 1e-10
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 63 2e-10
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 62 3e-10
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 62 3e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 62 5e-10
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 61 7e-10
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 59 3e-09
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 59 3e-09
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 58 5e-09
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 58 9e-09
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 58 9e-09
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 58 9e-09
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 57 1e-08
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 57 1e-08
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 55 6e-08
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 54 8e-08
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 54 1e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 53 2e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 51 1e-06
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 50 2e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 48 7e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 47 2e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 46 3e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 40 0.002
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 37 0.013
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 37 0.013
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 32 0.38
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar... 32 0.50
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 31 0.66
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 3.5
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 28 6.1
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 6.1
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 6.1
At2g25460.1 68415.m03049 expressed protein 28 6.1
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 28 8.1
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 28 8.1
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 8.1
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 8.1
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 220 bits (537), Expect = 1e-57
Identities = 100/171 (58%), Positives = 127/171 (74%), Gaps = 1/171 (0%)
Frame = +2
Query: 254 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 433
F KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK G
Sbjct: 59 FEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAG 118
Query: 434 YKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 610
+ EPTPIQ+QGWP+AM G++L+G+ TGSGKTL+Y+LPAIVH+N QP + GDGPI LVL
Sbjct: 119 FTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVL 178
Query: 611 APTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
APTRELA QIQQ A+ FG +S ++ TC++GG PK Q RDL++GVEIVIAT
Sbjct: 179 APTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIAT 229
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 208 bits (507), Expect = 4e-54
Identities = 96/181 (53%), Positives = 130/181 (71%), Gaps = 1/181 (0%)
Frame = +2
Query: 224 PRLGFCFAPTFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 403
P+ F F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 404 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIR 580
+ + + +G+ EPTPIQAQGWP+A+ G++L+G+ TGSGKTLAY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 581 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 760
+ DGPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIA
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIA 294
Query: 761 T 763
T
Sbjct: 295 T 295
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 208 bits (507), Expect = 4e-54
Identities = 96/181 (53%), Positives = 130/181 (71%), Gaps = 1/181 (0%)
Frame = +2
Query: 224 PRLGFCFAPTFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 403
P+ F F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 404 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIR 580
+ + + +G+ EPTPIQAQGWP+A+ G++L+G+ TGSGKTLAY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 581 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 760
+ DGPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIA
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIA 294
Query: 761 T 763
T
Sbjct: 295 T 295
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 160 bits (388), Expect = 1e-39
Identities = 80/164 (48%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
Frame = +2
Query: 275 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 454
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 455 QAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 631
QAQ WPIAM G+++V + TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELA 243
Query: 632 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+AT
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVAT 287
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 160 bits (388), Expect = 1e-39
Identities = 80/164 (48%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
Frame = +2
Query: 275 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 454
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 455 QAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 631
QAQ WPIAM G+++V + TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELA 243
Query: 632 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+AT
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVAT 287
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 160 bits (388), Expect = 1e-39
Identities = 80/164 (48%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
Frame = +2
Query: 275 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 454
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 455 QAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 631
QAQ WPIAM G+++V + TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELA 243
Query: 632 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+AT
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVAT 287
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 155 bits (376), Expect = 3e-38
Identities = 72/170 (42%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Frame = +2
Query: 257 NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGY 436
NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F + +K Y
Sbjct: 189 NKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAY 248
Query: 437 KEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLA 613
++PT IQ Q PI +SG++++G+ TGSGKT A++LP IVHI +QP ++R +GPI ++ A
Sbjct: 249 EKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICA 308
Query: 614 PTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
PTRELA QI A F +R + V+GG K EQ ++L+ G EIV+AT
Sbjct: 309 PTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVAT 358
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 150 bits (363), Expect = 1e-36
Identities = 80/178 (44%), Positives = 110/178 (61%), Gaps = 6/178 (3%)
Frame = +2
Query: 248 PTF-NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 412
P F NK+ PH P V SP E+ YR HEVT +G + P FE + P +
Sbjct: 390 PAFPNKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEIL 447
Query: 413 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRGD 589
+ + + G+ PTPIQAQ WPIA+ +++V + TGSGKTL Y++PA + + + R +
Sbjct: 448 RELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-N 506
Query: 590 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
GP L+LAPTRELA QIQ A FG +S + TC++GGAPK Q ++LERG +IV+AT
Sbjct: 507 GPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVAT 564
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 148 bits (358), Expect = 5e-36
Identities = 72/171 (42%), Positives = 102/171 (59%), Gaps = 1/171 (0%)
Frame = +2
Query: 254 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 433
F KNFY + + + EV YR E+ V G +V PI+++ + + +K +
Sbjct: 489 FRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLN 548
Query: 434 YKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 610
Y++P PIQ Q PI MSG++ +GV TGSGKTL ++LP + HI +QPP+ GDGPI LV+
Sbjct: 549 YEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 608
Query: 611 APTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
APTREL QQI F +R V+GG+ +Q +L+RG EIV+ T
Sbjct: 609 APTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 659
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 145 bits (351), Expect = 3e-35
Identities = 72/171 (42%), Positives = 101/171 (59%), Gaps = 1/171 (0%)
Frame = +2
Query: 254 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 433
F KNFY + + + V YR E+ V G +V PIQ++ + + +K +
Sbjct: 356 FRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLN 415
Query: 434 YKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 610
Y++P PIQAQ PI MSG++ +GV TGSGKTL ++LP + HI +QPP+ GDGPI LV+
Sbjct: 416 YEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 475
Query: 611 APTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
APTREL QQI F + V+GG+ +Q +L+RG EIV+ T
Sbjct: 476 APTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCT 526
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 119 bits (286), Expect = 3e-27
Identities = 58/116 (50%), Positives = 79/116 (68%), Gaps = 1/116 (0%)
Frame = +2
Query: 419 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRGDGP 595
V + G+ P+PIQAQ WPIAM +++V + TGSGKTL Y++P +H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GP 302
Query: 596 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
LVL+PTRELA QIQ A FG +S + C++GGAPK Q +++ERGV+IV+AT
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVAT 358
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 314 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 403
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 116 bits (280), Expect = 1e-26
Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Frame = +2
Query: 266 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 445
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 446 TPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLA 613
TPIQ QG P+ +SG++++G+ TGSGKTL ++LP I+ + PI G+GPIALV+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVIC 180
Query: 614 PTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEIVIAT 763
P+RELA+Q ++Q A Y +R+ GG R Q +++GV IV+AT
Sbjct: 181 PSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVAT 236
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 115 bits (276), Expect = 4e-26
Identities = 56/152 (36%), Positives = 91/152 (59%), Gaps = 4/152 (2%)
Frame = +2
Query: 320 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 499
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 500 GVP-TGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGH 667
G+ TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Query: 668 TSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
R T + GG EQ + +G EIVIAT
Sbjct: 415 YLGFRVTSIVGGQSIEEQGLKITQGCEIVIAT 446
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 110 bits (264), Expect = 1e-24
Identities = 62/175 (35%), Positives = 99/175 (56%), Gaps = 10/175 (5%)
Frame = +2
Query: 269 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 448
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 449 PIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAP 616
PIQ QG P+ ++G++++G+ TGSGKTL ++LP I+ + PI G+GPI L++ P
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230
Query: 617 TRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEIVIAT 763
+RELA+Q ++Q A Y +R+ GG R Q ++RGV IV+AT
Sbjct: 231 SRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVAT 285
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 106 bits (254), Expect = 2e-23
Identities = 63/159 (39%), Positives = 92/159 (57%), Gaps = 7/159 (4%)
Frame = +2
Query: 308 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 481
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 482 SGKNLVGVP-TGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQ 646
G++L+G+ TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISD 209
Query: 647 VAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
V + G +++ CV+GG+ K Q + GV+IVI T
Sbjct: 210 VLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGT 248
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 102 bits (244), Expect = 3e-22
Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Frame = +2
Query: 338 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTG 514
+ SG V P+ F E + + + ++ Y +PTP+Q PI + G++L+ TG
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 515 SGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYV 679
SGKT A+ P I I ++R G P+A++L+PTRELA QI A F + + V
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266
Query: 680 RNTCVFGGAPKREQARDLERGVEIVIAT 763
+ +GG P +Q R+LERGV+I++AT
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVAT 294
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 101 bits (241), Expect = 7e-22
Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 6/178 (3%)
Frame = +2
Query: 248 PTFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 427
P N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 428 MGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQPPIRRGDG---- 592
Y +PTP+Q PI +G++L+ TGSGKT A+ P I I I R G
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGV 223
Query: 593 -PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
P+A++L+PTRELA QI A F + + V+ +GG P +Q R+LERGV+I++AT
Sbjct: 224 YPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVAT 281
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 96.3 bits (229), Expect = 2e-20
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Frame = +2
Query: 338 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTG 514
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ TG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 515 SGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYV 679
SGKT A+ P I I + R G P A++L+PTRELA QI A F + + V
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 680 RNTCVFGGAPKREQARDLERGVEIVIAT 763
+ +GG P +Q R+LERG +I++AT
Sbjct: 259 KVVVAYGGTPIHQQLRELERGCDILVAT 286
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 96.3 bits (229), Expect = 2e-20
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Frame = +2
Query: 338 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTG 514
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ TG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 515 SGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYV 679
SGKT A+ P I I + R G P A++L+PTRELA QI A F + + V
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 680 RNTCVFGGAPKREQARDLERGVEIVIAT 763
+ +GG P +Q R+LERG +I++AT
Sbjct: 259 KVVVAYGGTPIHQQLRELERGCDILVAT 286
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 91.1 bits (216), Expect = 8e-19
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 6/161 (3%)
Frame = +2
Query: 299 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 472
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 473 IAMSGKNLVG-VPTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQI 640
A++GK+L+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 641 QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
+ A G + V GG P Q +++GVE++I T
Sbjct: 203 EDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGT 243
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 89.0 bits (211), Expect = 3e-18
Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Frame = +2
Query: 428 MGYKEPTPIQAQGWPIAMSGKN-LVGVPTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIA 601
MG++ PT +QAQ P+ +SG++ LV PTG+GKT+AY+ P I H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 602 LVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
LV+ PTREL Q+ + H ++ V GG K ++ L +G+ I+IAT
Sbjct: 108 LVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIAT 162
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 87.0 bits (206), Expect = 1e-17
Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVH 556
FE N V +K GYK PTPIQ + P+ +SG ++V + TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 557 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 736
+ P +G G AL+L+PTR+LA+Q + + G + +R + + GG +Q +L
Sbjct: 90 LKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELT 146
Query: 737 RGVEIVIAT 763
+G +++IAT
Sbjct: 147 KGPDVIIAT 155
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 84.6 bits (200), Expect = 7e-17
Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Frame = +2
Query: 341 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL-VGVPTGS 517
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 518 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 697
GKT A+ LP + + +P +R L+L PTRELA QI + + + ++ +
Sbjct: 216 GKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIV 273
Query: 698 GGAPKREQARDLERGVEIVIAT 763
GG REQ L +IV+AT
Sbjct: 274 GGLSVREQEVVLRSMPDIVVAT 295
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 79.8 bits (188), Expect = 2e-15
Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Frame = +2
Query: 371 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV-GVPTGSGKTLAYILPA 547
++ F+E + V ++ + + PT IQ G P M K++V G TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLP- 169
Query: 548 IVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 712
IV + + G P +VL PTREL++Q+ +VA H + R+ V GG+
Sbjct: 170 IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRI 229
Query: 713 REQARDLERGVEIVIAT 763
R Q L +++V+ T
Sbjct: 230 RPQEDSLNNAIDMVVGT 246
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 78.6 bits (185), Expect = 4e-15
Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Frame = +2
Query: 344 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSG 520
V VEV NP + +++ +K G + PIQA + + + G +LVG TG G
Sbjct: 87 VEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQG 145
Query: 521 KTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 685
KTLA++LP + + N P + G P LVL PTRELA+Q+ +G + + +
Sbjct: 146 KTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSS 205
Query: 686 TCVFGGAPKREQARDLERGVEIVIAT 763
C++GG Q L+RGV+IV+ T
Sbjct: 206 CCLYGGDSYPVQEGKLKRGVDIVVGT 231
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 75.8 bits (178), Expect = 3e-14
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Frame = +2
Query: 284 TVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 463
T K EVE+ ++ + + + FE + D + +K MG+ T IQA+
Sbjct: 127 TEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKEMGFARMTQIQAK 183
Query: 464 GWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 640
P M G++++G TGSGKTLA+++PA V + + +G LV+ PTRELA Q
Sbjct: 184 AIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQS 242
Query: 641 QQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
VA + H+ V V GG ++ +A L +GV +++AT
Sbjct: 243 YGVAKELLKYHSQTVGK--VIGGEKRKTEAEILAKGVNLLVAT 283
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 74.5 bits (175), Expect = 7e-14
Identities = 44/122 (36%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Frame = +2
Query: 407 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHI-NNQPPIR 580
+ + + + G ++ PIQ AM G++++G TG+GKTLA+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 581 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVI 757
RG P+ LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R L+ GV++ +
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAV 231
Query: 758 AT 763
T
Sbjct: 232 GT 233
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 73.3 bits (172), Expect = 2e-13
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Frame = +2
Query: 323 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 490
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 491 NLVG-VPTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 637
PTGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 72.9 bits (171), Expect = 2e-13
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 3/122 (2%)
Frame = +2
Query: 407 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINN-QPPIR 580
+ + +K G ++ PIQ AM G++++G TG+GKTLA+ +P I I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 581 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVI 757
RG P LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R+L G+++ +
Sbjct: 187 RGKNPQCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAV 243
Query: 758 AT 763
T
Sbjct: 244 GT 245
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 70.1 bits (164), Expect = 2e-12
Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Frame = +2
Query: 356 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV-PTGSGKTLA 532
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+ TGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 533 YILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADFGHTSYVRNTC 691
+ +P + + +++P R P A VL+PTRELA QI + G +R
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAV 122
Query: 692 VFGGAPKREQARDLERGVEIVIAT 763
+ GG + +Q L + +++AT
Sbjct: 123 LVGGIDRMQQTIALGKRPHVIVAT 146
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 70.1 bits (164), Expect = 2e-12
Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Frame = +2
Query: 311 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 490
+E+ + + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 491 NLVGVP-TGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 664
+++G TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEELL 185
Query: 665 HTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
+ V GG +R +A+ + G +VIAT
Sbjct: 186 KHHSQTVSMVIGGNNRRSEAQRIASGSNLVIAT 218
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 68.5 bits (160), Expect = 5e-12
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVH 556
FE ++ + K +G ++PTP+Q P ++G++++G+ TGSGKT A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
Query: 557 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 736
+ P G ALV+ PTRELA Q+ + G +R + + GG Q L
Sbjct: 119 RLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLV 174
Query: 737 RGVEIVIAT 763
IVI T
Sbjct: 175 SRPHIVITT 183
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 68.1 bits (159), Expect = 6e-12
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Frame = +2
Query: 308 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 487
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 488 KNLVG-VPTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 640
K++V TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 67.7 bits (158), Expect = 8e-12
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Frame = +2
Query: 392 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQ 568
+ P +++ ++ G PIQ A+ G++++ TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 569 P----PIRR-GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 733
RR G P LVLAPTRELA+Q+++ + Y+ CV+GG Q L
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSAL 225
Query: 734 ERGVEIVIAT 763
RGV++V+ T
Sbjct: 226 TRGVDVVVGT 235
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 67.7 bits (158), Expect = 8e-12
Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Frame = +2
Query: 461 QGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTREL 628
Q P A++GK+L+ TGSGKT ++++P I +++ P + P+A+VLAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 629 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 763
Q++ A G + V GG P Q +++GVE++I T
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGT 106
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 66.9 bits (156), Expect = 1e-11
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN-LVGVPTGSGKTLAYILPAIVH 556
F E + + + +K + P IQA + + GK+ ++ +GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 557 INN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTSY-VRNTCVFGGAPKREQ 721
+ Q + G P +VL PT ELA Q+ + R+ V GG +R Q
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQ 495
Query: 722 ARDLERGVEIVIAT 763
+LE+GV+++IAT
Sbjct: 496 LENLEQGVDVLIAT 509
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVH 556
FE+ + G+ G++ P+PIQ + PIA++G++++ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 557 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 736
I+ + + A+++ PTRELA Q QV + G ++ GG ++ L
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLY 247
Query: 737 RGVEIVIAT 763
+ V +++ T
Sbjct: 248 QPVHLLVGT 256
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVH 556
FE+ + G+ G++ P+PIQ + PIA++G++++ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 557 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 736
I+ + + A+++ PTRELA Q QV + G ++ GG ++ L
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLY 247
Query: 737 RGVEIVIAT 763
+ V +++ T
Sbjct: 248 QPVHLLVGT 256
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 63.3 bits (147), Expect = 2e-10
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Frame = +2
Query: 368 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKT--LAYI 538
PI+ F++ D V +GV GYK+P+ IQ + + G++++ +G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 539 LPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR 715
+ IV+I+++ LVL+P+RELA Q ++ G HT+ + C+ GG
Sbjct: 80 VCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHTNIQAHACI-GGKSIG 131
Query: 716 EQARDLERGVEIVIAT 763
E + LERGV V T
Sbjct: 132 EDIKKLERGVHAVSGT 147
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 62.5 bits (145), Expect = 3e-10
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVH 556
FE+ + +G+ G+++P+PIQ + PIA++G +++ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 557 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 736
I+ + + A++L PTRELA Q QV + ++ GG R+ L
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLH 240
Query: 737 RGVEIVIAT 763
+ V +++ T
Sbjct: 241 QPVHLLVGT 249
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 62.5 bits (145), Expect = 3e-10
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVH 556
FE+ + +G+ G+++P+PIQ + PIA++G +++ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 557 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 736
I+ + + A++L PTRELA Q QV + ++ GG R+ L
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLH 240
Query: 737 RGVEIVIAT 763
+ V +++ T
Sbjct: 241 QPVHLLVGT 249
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 61.7 bits (143), Expect = 5e-10
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVH 556
FE+ + +G+ G+++P+PIQ + PIA++G +++ G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 557 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 736
I+ + + + A++L PTRELA Q QV + + GG R+ L
Sbjct: 216 IDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLY 270
Query: 737 RGVEIVIAT 763
+ V +++ T
Sbjct: 271 QPVHLLVGT 279
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 61.3 bits (142), Expect = 7e-10
Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Frame = +2
Query: 431 GYKEPTPIQAQGWPIAMSGKNLV-GVPTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 598
G++ TP+QA+ P S K++V TGSGKTLA++LP I I N+ PP + +
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 92
Query: 599 ALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDL-ERGVEIVIAT 763
++++PTREL+ QI +VA F T V + + GG L E G ++I T
Sbjct: 93 GVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGT 149
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 59.3 bits (137), Expect = 3e-09
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Frame = +2
Query: 413 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQPPIRRGD 589
+ +K G++ T +Q PI + GK+++ TG+GKT+A++LPAI + PP R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 590 GP---IALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIV 754
I LV+ PTRELA Q A H S + G EQ R +I+
Sbjct: 455 RQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQIL 514
Query: 755 IAT 763
+AT
Sbjct: 515 VAT 517
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 59.3 bits (137), Expect = 3e-09
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Frame = +2
Query: 356 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLA 532
EVH + F+ + + +G+ G+++P+ IQ +G G +++ +G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 533 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 712
+ + ++ + ALVLAPTRELAQQI++V G V+ GG
Sbjct: 93 FCSGVLQQLDYALLQCQ-----ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSV 147
Query: 713 REQARDLERGVEIVIAT 763
RE R L+ GV +V+ T
Sbjct: 148 REDQRILQAGVHVVVGT 164
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 58.4 bits (135), Expect = 5e-09
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVH 556
F++ +G++ G+K T +Q P+ + GK+++ TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 557 INNQPPIRRGDGP---IALVLAPTRELA-QQIQQVAADFGHTSYVRNTCVFGGAPKREQA 724
+ PP R + I LV+ PTRELA Q + + + V GG +
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201
Query: 725 RDLERG-VEIVIAT 763
R L++ +I++AT
Sbjct: 202 RRLQKSPCQILVAT 215
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 57.6 bits (133), Expect = 9e-09
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Frame = +2
Query: 413 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQPPIRRGD 589
+ +K GY+ T +Q PI + GK+++ TG+GKT+A++LP+I + PP +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 590 --GPI-ALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIV 754
PI ALV+ PTRELA Q A H S + G EQ R +I+
Sbjct: 127 KRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQIL 186
Query: 755 IAT 763
+AT
Sbjct: 187 VAT 189
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 57.6 bits (133), Expect = 9e-09
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVH 556
F+ + + +G+ G+++P+ IQ +G G +++ +G+GKT + +
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100
Query: 557 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 736
++ + ALVLAPTRELAQQI++V G V+ GG RE R L+
Sbjct: 101 LDFSLIQCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 155
Query: 737 RGVEIVIAT 763
GV +V+ T
Sbjct: 156 AGVHVVVGT 164
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 57.6 bits (133), Expect = 9e-09
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = +2
Query: 398 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQPP 574
PD ++ G+ G+++P+ IQ +G G +++ +G+GKT + + ++
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLV 108
Query: 575 IRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIV 754
+ ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V
Sbjct: 109 QCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVV 163
Query: 755 IAT 763
+ T
Sbjct: 164 VGT 166
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +2
Query: 371 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPA 547
++ F + D ++G+K Y + T +Q+ P A+ G++++G TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 548 IVHINNQPPIRRGDGPIALVLAPTRELAQQ 637
+ ++ + DG ++++PTRELA Q
Sbjct: 130 LEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 57.2 bits (132), Expect = 1e-08
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Frame = +2
Query: 341 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGS 517
T G+E PI F + + V +GV G+++P+ IQ + + G++++ +G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 518 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 694
GKT L ++ + AL+L+PTRELA Q ++ G H + + C+
Sbjct: 84 GKTSMIALSVCQVVDTSSREVQ-----ALILSPTRELATQTEKTIQAIGLHANIQAHACI 138
Query: 695 FGGAPKREQARDLERGVEIVIAT 763
GG E R LE GV +V T
Sbjct: 139 -GGNSVGEDIRKLEHGVHVVSGT 160
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 54.8 bits (126), Expect = 6e-08
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Frame = +2
Query: 431 GYKEPTPIQAQGWPIAMSGKNLV-GVPTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 598
G++ TP+QA+ P S K++V TGSGKTLA++LP I I N+ PP + +
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 93
Query: 599 ALVLAPTRELAQQIQQVA 652
++++PTREL+ QI +VA
Sbjct: 94 GVIISPTRELSAQIHKVA 111
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 54.4 bits (125), Expect = 8e-08
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Frame = +2
Query: 446 TPIQAQGWPIAMSGKNL-VGVPTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLA 613
TP+QA P+ S K++ V TGSGKTLA+++P + + PP + + ++++
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIIS 97
Query: 614 PTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDL-ERGVEIVIAT 763
PTREL+ QI VA F T + V + + GG + + + E G ++I T
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGT 149
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 54.0 bits (124), Expect = 1e-07
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Frame = +2
Query: 407 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVP-TGSGKTLAYILPAIVHI------- 559
+ + + + +KEPT IQ + +A GK+++G TGSGKTLA+ LP + +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 560 -------NNQPPIRRGDGPI-ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKR 715
+ DG + AL++ PTRELA Q+ + + V+ + GG
Sbjct: 261 GKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSE 320
Query: 716 EQARDLERGVEIVIAT 763
+Q R L+ EIV+AT
Sbjct: 321 KQERRLKEKPEIVVAT 336
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 53.2 bits (122), Expect = 2e-07
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN-LVGVPTGSGKTLAYILPAIVH 556
FEE PD + ++ G+ PT +Q+ P + G + ++ TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 557 INNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVAADFGHTSYVRNTCVFGGAP 709
I R A+++AP+REL QI ++V G + GGA
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGAN 231
Query: 710 KREQARDLERGVEIVI 757
+ Q L++ ++
Sbjct: 232 RMRQEEALKKNKPAIV 247
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +2
Query: 398 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN-LVGVPTGSGKTLAYILPAIVHINNQPP 574
P+++ ++ +G+ PT IQ + P +G++ ++ TGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ-- 141
Query: 575 IRRGDGPIALVLAPTRELAQQIQQVA 652
A+++ PTREL Q+ +VA
Sbjct: 142 ---RSSVQAVIVVPTRELGMQVTKVA 164
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 49.6 bits (113), Expect = 2e-06
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Frame = +2
Query: 326 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMSG--KNL 496
+N + SG + FE+ N + +G+ M +++P+ IQA P+ M+ K+L
Sbjct: 75 SNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHL 134
Query: 497 VG-VPTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 664
+ GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 135 IAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.0 bits (109), Expect = 7e-06
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN-LVGVPTGSGKTLAYILPAIVH 556
F+E+ + + G + T +Q + GK+ LV TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 557 I----NNQPPIRRGDGPIALVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKRE 718
+ N+ + + AL+L PTRELA QI + A H T + G K +
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLD 449
Query: 719 QARDLERGVEIVIAT 763
Q R +I+IAT
Sbjct: 450 QQRLESEPCQILIAT 464
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 46.8 bits (106), Expect = 2e-05
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 13/182 (7%)
Frame = +2
Query: 257 NKNFYDPH---PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 418
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 419 VKTMGYKEPTPIQAQGWPIAMSGKN-LVGVPTGSGKTLAYILPAIVHI----NNQPPIRR 583
+ G + T +Q + GK+ LV TG+GK++A++LPAI + N+ + +
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHK 449
Query: 584 GDGPIALVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 757
L+L PTRELA QI + A H T + G + +Q R +I+I
Sbjct: 450 VAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILI 509
Query: 758 AT 763
AT
Sbjct: 510 AT 511
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 46.0 bits (104), Expect = 3e-05
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Frame = +2
Query: 407 VQQGVKTMGYKEPTPIQAQGW-----PIAMSGKNLVGVPTGSGKTLAYILPAIVHINNQP 571
+++ ++ MG P+Q W P V PTGSGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 572 PIRRGDGPIALVLAPTRELAQQIQQV 649
P+R ALV+ PTR+LA Q++ V
Sbjct: 91 PVR---CLRALVVLPTRDLALQVKDV 113
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Frame = +2
Query: 401 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN-LVGVPTGSGKTLAYILPAIVHINN---- 565
D V ++ G+ P+ QA P +SGK+ +V TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALD 148
Query: 566 QPPIRRGDGP-----IALVLAPTRELAQQI 640
R + P I+L+L P L +Q+
Sbjct: 149 SEVTNREERPFPLKNISLILCPNVMLCEQV 178
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 37.1 bits (82), Expect = 0.013
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 431 GYKEPTPIQAQGWPIAMSGKNLV-GVPTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 604
G++ P+ +Q + P A+ G +++ +G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 605 VLAPTRELAQQI 640
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 37.1 bits (82), Expect = 0.013
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 431 GYKEPTPIQAQGWPIAMSGKNLV-GVPTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 604
G++ P+ +Q + P A+ G +++ +G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 605 VLAPTRELAQQI 640
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 32.3 bits (70), Expect = 0.38
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 362 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN-LVGVPTGSGKTLAYI 538
H Y E D + G K P+Q Q +M K+ V +PTG GK+L Y
Sbjct: 180 HETPSYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQ 239
Query: 539 LPA 547
LPA
Sbjct: 240 LPA 242
>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2146
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 449 PIQAQGWPIAMSGKN--LVGVPTGSGKTLAYILPAIVHINNQPPIR 580
PIQ Q + + N LVG PTGSGKT++ L + + QP ++
Sbjct: 1347 PIQTQIFHVLYHTDNNVLVGAPTGSGKTISAELAMLRLFSTQPDMK 1392
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 422 KTMGYKEPTPIQAQGWPIAMSGKNL-VGVPTGSGKTLAYILPAIV 553
K G P Q + MSG ++ V +PTG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 431 GYKEPTPIQAQGWPIAMSGKN-LVGVPTGSGKTLAYILPAIV 553
GY Q Q + + G + ++ +PTG+GK+L Y +PA++
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 509 TGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 640
+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 9 SGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 191 FPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYG 12
+P KSS +K I V + + A FVAS + TRH +++E+ + YG
Sbjct: 235 YPKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTRHKKVKEVLEEWEIQYG 287
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 639 ICCANSLVGAKTKAIGPSPLRI 574
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 6.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 138 EKNYRRICCLLQIWNHRFHGYY 73
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/80 (28%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Frame = +2
Query: 356 EVHNPIQYFEEANFP--DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPTGSGKTL 529
E + P Y A +P Y Q G GY P QG+P G P G
Sbjct: 504 EGYPPAGYPPPAGYPPPQYPQAGYPPAGYPPPQQGYGQGYP--AQGYPPPQYPQGHPPQY 561
Query: 530 AYILPAIVHINNQPPIRRGD 589
Y P H PP + D
Sbjct: 562 PYQGPPPPHYGQAPPKNKKD 581
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 27.9 bits (59), Expect = 8.1
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Frame = +2
Query: 389 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPTGSGKTLAYILPAIVH---I 559
++ P++ Q + M + G + + L+ PTG+GKT +L I+H +
Sbjct: 490 SDLPEWAQPAFRGMQQLNRVQSKVYGTALFKADNILLCAPTGAGKTNVAVL-TILHQLGL 548
Query: 560 NNQPPIRRGDGPIALV-LAPTR----ELAQQIQQVAADFGHT 670
N P G +V +AP + E+ + Q DFG T
Sbjct: 549 NMNPGGTFNHGNYKIVYVAPMKALVAEVVDSLSQRLKDFGVT 590
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 248 PTFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQ 415
P K D H +L P+E + + H+V + VE ++ E+ F + VQ+
Sbjct: 157 PQMPKQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 248 PTFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQ 415
P K D H +L P+E + + H+V + VE ++ E+ F + VQ+
Sbjct: 233 PQMPKQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,775,904
Number of Sequences: 28952
Number of extensions: 370234
Number of successful extensions: 1237
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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