Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0060
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47300.1 68416.m05141 selenoprotein-related contains weak sim...    48   5e-06
At5g58640.1 68418.m07348 selenoprotein-related contains weak sim...    47   1e-05
At2g32610.1 68415.m03981 cellulose synthase family protein simil...    33   0.16 
At2g32540.1 68415.m03975 cellulose synthase family protein simil...    31   1.1  
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-...    30   1.9  

>At3g47300.1 68416.m05141 selenoprotein-related contains weak
           similarity to selenoprotein W (Swiss-Prot:P49904)
           [Rattus norvegicus]
          Length = 209

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +3

Query: 276 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLSRIIGFGK 455
           G   G+T+ I +C SC YK        +++  +P + V+ ANY  P     L++++   +
Sbjct: 52  GVGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQ 111

Query: 456 MLVIMCILSGVNIF 497
           + VI  I+ G  IF
Sbjct: 112 VGVIGLIMGGEQIF 125



 Score = 35.1 bits (77), Expect = 0.051
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 518 PAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEISLNNIPLWSK 658
           PAW+     N+  +    + L N ++  L SSGAFE+S N   ++SK
Sbjct: 134 PAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFSK 180


>At5g58640.1 68418.m07348 selenoprotein-related contains weak
           similarity to Selenoprotein W (Swiss-Prot:P49904)
           [Rattus norvegicus]
          Length = 228

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/69 (33%), Positives = 38/69 (55%)
 Frame = +3

Query: 288 GHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLSRIIGFGKMLVI 467
           G+T+ I +C SC YK        +++  +P + VI ANY PP     L++++   +M VI
Sbjct: 73  GNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILANYPPPAPKRLLAKVVPVVQMGVI 132

Query: 468 MCILSGVNI 494
             I++G  I
Sbjct: 133 GMIVAGDRI 141



 Score = 36.7 bits (81), Expect = 0.017
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 518 PAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEISLNNIPLWSK 658
           PAW+     N+  +    + + N ++  L SSGAFE+  N  P++SK
Sbjct: 151 PAWFHSLRANRFGSMASTWLIGNFLQSYLQSSGAFEVHCNGEPVFSK 197


>At2g32610.1 68415.m03981 cellulose synthase family protein similar
           to Zea mays cellulose synthase-3 [gi:9622878], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 757

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
 Frame = -3

Query: 368 LLYNSCIVFKYLFVATRITVIDIHCMPDTCTNFTNAAFSL-SALI*VSVNNKVQTSNIAF 192
           LL+NS +  K L++   +T++ IHC+  T   F +  +S+ S L+  SV   V TS+  F
Sbjct: 558 LLHNSTLFPKGLYLGITVTLVGIHCL-YTLWEFMSLGYSVQSWLVSQSVWRIVATSSWLF 616

Query: 191 R*NILFDILISFL 153
               +FDI +  L
Sbjct: 617 S---IFDITLKLL 626


>At2g32540.1 68415.m03975 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 755

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 368 LLYNSCIVFKYLFVATRITVIDIHCMPDTCTNFTNAAFSLSA 243
           LL+NS +  K +++   IT++ IHC+  T   F N  FS+ +
Sbjct: 558 LLHNSALFPKGVYLGIIITLVGIHCL-YTLWEFMNLGFSIQS 598


>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Homo sapiens] GI:5410257; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 823

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 666 SLYLDQSGMLLRDISKAPEDISCPSIIFAKKNIIMHAYSLFSRHQL 529
           +L+ D  GML  D    P DI    +    KNI+M +    SRH L
Sbjct: 353 NLWEDDEGMLELDFDTDPHDIQLRGVNRDDKNIVMASQFPNSRHYL 398


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,523,819
Number of Sequences: 28952
Number of extensions: 385941
Number of successful extensions: 930
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)