Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0052
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    36   0.030
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ...    31   1.1  
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ...    29   3.5  
At3g19920.1 68416.m02522 expressed protein                             29   4.6  
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ...    28   6.1  
At2g06200.1 68415.m00682 expressed protein                             28   6.1  
At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin...    28   8.1  
At2g10110.1 68415.m01050 hypothetical protein                          28   8.1  

>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 15/59 (25%), Positives = 36/59 (61%)
 Frame = +3

Query: 501 SLGTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 677
           +L  +K + E++  +H   +KN+D+     +  +IE EF+++Q + I+ ++ + + L+R
Sbjct: 188 ALSLEKLVNEKLLNLHSVASKNNDV----HLADFIESEFLTEQVEAIKLISEYVAQLRR 242



 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 265 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 426
           SY Y    +YF+      +G AK F++ S +  E    L+++  KRGG++   S
Sbjct: 112 SYVYHAMYAYFDRDNIALKGLAKFFKESSLEEREHAEKLMEYQNKRGGRVKLQS 165


>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 265 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKM 414
           SY Y    +YF+      +G AK F++ S +  E    L+++  KRGG++
Sbjct: 110 SYVYHALYAYFDRDNVALKGLAKFFKESSVEEREHAELLMEYQNKRGGRV 159


>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
           subunit cowpea2 precursor GI:2970654 (Vigna
           unguiculata); contains Pfam profile PF00210:
           Ferritin-like domain
          Length = 253

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 265 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 426
           SY Y    +YF+      +GFAK F   S +        +++  KRGG++   S
Sbjct: 104 SYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKRGGRVKLQS 157


>At3g19920.1 68416.m02522 expressed protein 
          Length = 416

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 701 FPVVLGYEPLEVRGVTREATNRIGLLTHEFLL-DVLSDLSI 582
           FPV+ GYE +EV     +A + +  L  E LL + L D S+
Sbjct: 352 FPVLTGYERVEVERAIDKAISTLPALDQEILLTNWLQDFSV 392


>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase;
            contains non-consensus splice aite AC at exon 33
          Length = 1959

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 295  FNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRG 405
            +N +  NR G      K  +  WEK IG ++H  KRG
Sbjct: 1729 WNKWIYNRGGIGVPPEKSWESWWEKEIGHLRHSGKRG 1765


>At2g06200.1 68415.m00682 expressed protein
          Length = 244

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 407 PPLLVTCFMRPMVFSHESSDNFLKSFANPSL 315
           PP L+    RP +FS  SS +   SF +P+L
Sbjct: 32  PPHLLFLIKRPFLFSSSSSSSSSSSFFSPTL 62


>At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin
           [Arabidopsis thaliana] GI:1246401, GI:8163920
          Length = 255

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 265 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKM 414
           SY Y    +YF+      +G AK F++ S++        +++  +RGG++
Sbjct: 109 SYVYHSMYAYFDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRGGRV 158


>At2g10110.1 68415.m01050 hypothetical protein
          Length = 169

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 169 KSAALQRVLRPIQGQPRCS---ERTEGISLTVLKRSYHYLLSASYF 297
           K   LQ++ RPI G PR S     ++   +  ++ S H+ +S+ YF
Sbjct: 109 KKRRLQQITRPITGPPRSSIVLNPSQYCVVLSIRVSEHFAISSLYF 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,435,438
Number of Sequences: 28952
Number of extensions: 303556
Number of successful extensions: 833
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)