Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0051
(704 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54290.1 68414.m06189 eukaryotic translation initiation facto... 73 1e-13
At4g27130.1 68417.m03899 eukaryotic translation initiation facto... 71 6e-13
At5g54760.1 68418.m06820 eukaryotic translation initiation facto... 71 8e-13
At5g54940.2 68418.m06843 eukaryotic translation initiation facto... 70 2e-12
At5g54940.1 68418.m06842 eukaryotic translation initiation facto... 70 2e-12
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera... 34 0.11
At5g04780.1 68418.m00494 SEC14 cytosolic factor-related contains... 27 9.2
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 27 9.2
>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
SUI1, putative similar to P|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 73.3 bits (172), Expect = 1e-13
Identities = 34/66 (51%), Positives = 41/66 (62%)
Frame = +1
Query: 37 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 216
+ +Q FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++
Sbjct: 4 LEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDL 63
Query: 217 KKEFAC 234
KKEF C
Sbjct: 64 KKEFCC 69
Score = 52.0 bits (119), Expect = 4e-07
Identities = 20/36 (55%), Positives = 30/36 (83%)
Frame = +2
Query: 257 EYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 364
E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 78 ELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 71.3 bits (167), Expect = 6e-13
Identities = 33/58 (56%), Positives = 38/58 (65%)
Frame = +1
Query: 61 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 234
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF C
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCC 69
Score = 52.0 bits (119), Expect = 4e-07
Identities = 20/36 (55%), Positives = 30/36 (83%)
Frame = +2
Query: 257 EYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 364
E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 78 ELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 70.9 bits (166), Expect = 8e-13
Identities = 33/58 (56%), Positives = 38/58 (65%)
Frame = +1
Query: 61 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 234
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF C
Sbjct: 12 FDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCC 69
Score = 52.0 bits (119), Expect = 4e-07
Identities = 20/36 (55%), Positives = 30/36 (83%)
Frame = +2
Query: 257 EYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 364
E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 78 ELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/66 (46%), Positives = 46/66 (69%)
Frame = +1
Query: 37 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 216
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 217 KKEFAC 234
KK+F C
Sbjct: 63 KKDFCC 68
Score = 50.8 bits (116), Expect = 9e-07
Identities = 18/36 (50%), Positives = 30/36 (83%)
Frame = +2
Query: 257 EYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 364
E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 77 ELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/66 (46%), Positives = 46/66 (69%)
Frame = +1
Query: 37 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 216
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 217 KKEFAC 234
KK+F C
Sbjct: 63 KKDFCC 68
Score = 50.8 bits (116), Expect = 9e-07
Identities = 18/36 (50%), Positives = 30/36 (83%)
Frame = +2
Query: 257 EYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 364
E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 77 ELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +1
Query: 1 VSLKQRDPTFNRMSIQNLN--TF-DPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 162
+S+ R N +++NL+ TF D F D + S+ DDVQ+ LVH +RNG K L+
Sbjct: 41 LSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLVHF---ERNGDKALS 94
>At5g04780.1 68418.m00494 SEC14 cytosolic factor-related contains
Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; contains Pfam profile PF01535:
PPR repeat (three copies)
Length = 864
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -3
Query: 207 HDLLQVIFRGKALHRSQRLT-PVSLLDTDVD*TILNVVLRAFDSIGEWVECV-EILDG 40
H++LQ+ R A+ ++ + +D + D T+LNV++ A+ G +VE ++ DG
Sbjct: 57 HEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCG-FVELARQVFDG 113
>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 510 VPCDFLCCIKYCKSYILSPP 569
VPC +CC C S++ S P
Sbjct: 309 VPCGHMCCCTACSSHLTSCP 328
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,995,657
Number of Sequences: 28952
Number of extensions: 309482
Number of successful extensions: 857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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