Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0048
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    29   2.7  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    29   2.7  
At1g53250.1 68414.m06034 expressed protein                             27   6.3  

>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 316 YRLCERRDVAPAPCSVGTYQDPGM 245
           YR   RR +  APCSVG + D G+
Sbjct: 524 YRWVNRRVLLQAPCSVGIFVDRGL 547


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 316 YRLCERRDVAPAPCSVGTYQDPGM 245
           YR   RR +  APCSVG + D G+
Sbjct: 592 YRWVNRRVLLQAPCSVGIFVDRGL 615


>At1g53250.1 68414.m06034 expressed protein
          Length = 363

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 351 RRSAEKRQIP*EEGRSEGTVRERSEERLLP 440
           RR+AEK++   E+ R EG +R+  +ER  P
Sbjct: 246 RRAAEKKKEREEKDRREGKIRKPKQERENP 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,502,282
Number of Sequences: 28952
Number of extensions: 149302
Number of successful extensions: 373
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)