Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0035
(565 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ... 91 5e-19
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 87 8e-18
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 87 1e-17
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 84 7e-17
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 80 1e-15
At4g00450.1 68417.m00062 expressed protein 30 1.2
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ... 30 1.2
At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putati... 29 2.1
At1g52087.1 68414.m05877 hypothetical protein 29 2.1
At1g35110.1 68414.m04352 Ulp1 protease family protein similar to... 29 2.1
At5g08120.1 68418.m00947 myosin heavy chain-related identical to... 28 3.7
At2g31865.2 68415.m03893 poly (ADP-ribose) glycohydrolase (PARG)... 28 3.7
At1g23690.1 68414.m02991 expressed protein contains Pfam profile... 28 5.0
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II... 27 6.5
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II... 27 6.5
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put... 27 6.5
At5g52890.1 68418.m06564 AT hook motif-containing protein contai... 27 8.7
At5g47600.1 68418.m05875 heat shock protein-related contains wea... 27 8.7
At4g05160.1 68417.m00775 4-coumarate--CoA ligase, putative / 4-c... 27 8.7
>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 652
Score = 91.1 bits (216), Expect = 5e-19
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Frame = +2
Query: 146 VPGH-DRRASDQQEEPDVIHETRELDSGAGLLAGHRVYIVNIDAHDLAKGKPHLVLGLLW 322
VPG D RA + ++E + T L +VNI D+A+G PHLVLGL++
Sbjct: 167 VPGTIDERAINTKKELNPWERTENLSLCLNSAKAIGCTVVNIGTQDIAEGTPHLVLGLIF 226
Query: 323 QIIRIGLFNQITLEHCPGLTELLNDQERIEDLLALSPEAILLRWVNHQLQSAGVTRRCAN 502
QII+I L + L+ P L EL+ + + +E+L+ L+PE +LL+W+N L+ AG ++ N
Sbjct: 227 QIIKIQLLADLNLKKTPQLVELVEENQDVEELMGLAPEKLLLKWMNFHLKKAGYEKQVTN 286
Query: 503 FQT 511
F +
Sbjct: 287 FSS 289
Score = 63.7 bits (148), Expect = 8e-11
Identities = 31/55 (56%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Frame = +3
Query: 93 LYEKLKDGLILCKVINHPCPDTIDERAIN-KKNLTLYTKHENLTLALVSSQAIGC 254
L++ +KDG++LCK+IN P TIDERAIN KK L + + ENL+L L S++AIGC
Sbjct: 149 LFDLVKDGVLLCKLINIAVPGTIDERAINTKKELNPWERTENLSLCLNSAKAIGC 203
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 IVNIDAHDLAKGKPHLVLGLLWQIIRIGLFNQIT--LEHCPGLTELLNDQERIEDLLALS 430
+VN+ HD+ +G L+L LWQ++R + + HC G +D+
Sbjct: 466 LVNVAGHDIMQGNKKLLLAFLWQLMRYTMLQILNNLRSHCQG-----------KDI---- 510
Query: 431 PEAILLRWVNHQLQSAGVTRRCANFQ 508
EA +L W N +++ +G T + +F+
Sbjct: 511 TEADILNWANRKVKKSGRTSQAVSFK 536
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 1 EQMAFSGWINSNLEHDPDLKHLLPIDPEASS 93
E+ ++ INS L+ +P+LK LPI+P ++
Sbjct: 118 EKASYVSHINSYLKDEPNLKSYLPINPTTNA 148
>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 714
Score = 87.0 bits (206), Expect = 8e-18
Identities = 39/85 (45%), Positives = 56/85 (65%)
Frame = +2
Query: 257 IVNIDAHDLAKGKPHLVLGLLWQIIRIGLFNQITLEHCPGLTELLNDQERIEDLLALSPE 436
+VNI DLA+G+PHLVLGL+ Q+I+I L ++L+ P L EL+ D E IE+ L L PE
Sbjct: 213 VVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLSLKKMPQLVELVEDNEDIEEFLRLPPE 272
Query: 437 AILLRWVNHQLQSAGVTRRCANFQT 511
+LL+W+N L+ G + NF +
Sbjct: 273 KVLLKWMNFHLKKGGYKKTVGNFSS 297
Score = 65.3 bits (152), Expect = 3e-11
Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Frame = +3
Query: 84 SKQLYEKLKDGLILCKVINHPCPDTIDERAIN-KKNLTLYTKHENLTLALVSSQAIGC 254
S LYE +KDG++LCK+IN P TIDERAIN K+ L + ++EN TL L S++A+GC
Sbjct: 154 SNDLYELVKDGVLLCKLINIAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGC 211
Score = 33.9 bits (74), Expect = 0.075
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 248 RVYIVNIDAHDLAKGKPHLVLGLLWQIIR 334
R +VN+ +D+ +G L+LG LWQ++R
Sbjct: 468 RFSLVNVAGNDIVQGNKKLILGFLWQLMR 496
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 1 EQMAFSGWINSNLEHDPDLKHLLPIDPEAS 90
E+ +F IN L DP LK LP+DP+++
Sbjct: 126 EKGSFVLHINRYLGDDPFLKQFLPLDPDSN 155
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 86.6 bits (205), Expect = 1e-17
Identities = 38/83 (45%), Positives = 56/83 (67%)
Frame = +2
Query: 257 IVNIDAHDLAKGKPHLVLGLLWQIIRIGLFNQITLEHCPGLTELLNDQERIEDLLALSPE 436
+VNI DLA+G+PHLVLGL+ Q+I+I + + L+ P L ELL D + +E+LL L PE
Sbjct: 212 VVNIGTQDLAEGRPHLVLGLISQLIKIQVLADLNLKKTPQLVELLEDSDDVEELLRLPPE 271
Query: 437 AILLRWVNHQLQSAGVTRRCANF 505
+LL+W+N L+ G + +NF
Sbjct: 272 KVLLKWMNFHLKKGGYKKTVSNF 294
Score = 67.3 bits (157), Expect = 7e-12
Identities = 33/58 (56%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Frame = +3
Query: 84 SKQLYEKLKDGLILCKVINHPCPDTIDERAIN-KKNLTLYTKHENLTLALVSSQAIGC 254
S QLYE +KDG++LCK+IN P TIDERAIN K+ L + ++EN TL L S++A+GC
Sbjct: 153 SNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGC 210
Score = 34.7 bits (76), Expect = 0.043
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +2
Query: 257 IVNIDAHDLAKGKPHLVLGLLWQIIR 334
+VN+ +D+ +G L+LGLLWQ++R
Sbjct: 470 LVNVAGNDIVQGNKKLILGLLWQLMR 495
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 1 EQMAFSGWINSNLEHDPDLKHLLPIDPEAS 90
E+ F IN L DP LK LP+DP ++
Sbjct: 125 EKGPFVQHINRYLGDDPFLKQFLPLDPHSN 154
>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893, fimbrin [Schizosaccharomyces pombe]
GI:3057144; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 687
Score = 83.8 bits (198), Expect = 7e-17
Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Frame = +2
Query: 146 VPGH-DRRASDQQEEPDVIHETRELDSGAGLLAGHRVYIVNIDAHDLAKGKPHLVLGLLW 322
VPG D RA + ++ + L G +VNI D+A+G+P+LVLGL+
Sbjct: 173 VPGTIDERAINTKKTLNPWERNENLTLGLNSAKAIGCTVVNIGTQDIAEGRPYLVLGLIS 232
Query: 323 QIIRIGLFNQITLEHCPGLTELLNDQERIEDLLALSPEAILLRWVNHQLQSAGVTRRCAN 502
QII+I + + + P L +L++D + E+L+ L+PE +LL+W+N L+ AG ++ N
Sbjct: 233 QIIKIQMLADLNFKKTPSLFQLVDDTQDAEELMGLAPEKVLLKWMNFHLKKAGYEKQVTN 292
Query: 503 FQT 511
F +
Sbjct: 293 FSS 295
Score = 64.9 bits (151), Expect = 4e-11
Identities = 31/54 (57%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 YEKLKDGLILCKVINHPCPDTIDERAIN-KKNLTLYTKHENLTLALVSSQAIGC 254
++ +KDG++LCK+IN P TIDERAIN KK L + ++ENLTL L S++AIGC
Sbjct: 156 FDLVKDGVLLCKLINVAVPGTIDERAINTKKTLNPWERNENLTLGLNSAKAIGC 209
Score = 31.5 bits (68), Expect = 0.40
Identities = 20/87 (22%), Positives = 41/87 (47%)
Frame = +2
Query: 248 RVYIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFNQITLEHCPGLTELLNDQERIEDLLAL 427
R +VN+ +D+ +G L+L LWQ++R + L L + +++
Sbjct: 467 RFSLVNVAGNDIVQGNKKLLLAFLWQLMRYTMLQ---------LLRNLRSHSQGKEI--- 514
Query: 428 SPEAILLRWVNHQLQSAGVTRRCANFQ 508
+A +L W N +++ G T + +F+
Sbjct: 515 -TDADILNWANRKVKRGGRTSQADSFR 540
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 1 EQMAFSGWINSNLEHDPDLKHLLPIDPEASS 93
E+ ++ +N+ L DP LK LPIDP ++
Sbjct: 124 EKASYVSHVNNYLRDDPFLKSYLPIDPATNA 154
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/85 (42%), Positives = 55/85 (64%)
Frame = +2
Query: 257 IVNIDAHDLAKGKPHLVLGLLWQIIRIGLFNQITLEHCPGLTELLNDQERIEDLLALSPE 436
+VNI D+ +G+ HLVLG++ QII+I L + L+ P L EL+ D + +E+L++L PE
Sbjct: 213 VVNIGTQDIIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLVELVGDSKDVEELMSLPPE 272
Query: 437 AILLRWVNHQLQSAGVTRRCANFQT 511
ILLRW+N QL+ + NF +
Sbjct: 273 KILLRWMNFQLRKTEYKKTVTNFSS 297
Score = 63.7 bits (148), Expect = 8e-11
Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Frame = +3
Query: 84 SKQLYEKLKDGLILCKVINHPCPDTIDERAINKKN-LTLYTKHENLTLALVSSQAIGC 254
S L+E KDG++LCK+IN P TIDERAIN K+ L + ++EN TL L S++AIGC
Sbjct: 154 SNDLFEVAKDGVLLCKLINVAVPGTIDERAINTKSMLNPWERNENHTLCLNSAKAIGC 211
Score = 31.1 bits (67), Expect = 0.53
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 257 IVNIDAHDLAKGKPHLVLGLLWQIIRIGL 343
+VNI +D+ +G L+L LWQ++R +
Sbjct: 472 LVNIAGNDIVQGNKKLILAYLWQLMRYNI 500
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 245 HRVYIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFNQI 355
H + + ID H++ KG + L++++IR G+FN I
Sbjct: 572 HDIIVCWIDQHEVHKGGAKRLQLLVFELIRSGIFNPI 608
>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
similarity to Golgi-specific DHHC zinc figer protein
[Mus musculus] GI:21728103; contains Pfam profile
PF01529: DHHC zinc finger domain
Length = 477
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -1
Query: 415 ILDAF-LVIQQFRESGAVLQRYLVEETNSDDLPQETEHQMRFAFSKIVSVDVDDVHPMAC 239
ILD F L++ R+ G V + + ET DD P T M + + ++ + V +
Sbjct: 81 ILDIFFLLMTSSRDPGIVPRSFRPPET--DDAPDSTTPSMEWVSGRTPNIRIPRVKDVTV 138
Query: 238 EETSARVKF--SCFVY 197
+ +VKF +C +Y
Sbjct: 139 NGHTVKVKFCDTCLLY 154
>At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putative
similar to delta-8 sphingolipid desaturase GI:3819708
from [Brassica napus]
Length = 449
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 31 SNLEHDPDLKHLLPIDPEASSSTKNSKTDLFYAK 132
++L+HDPDL+H +PI S+ NS T FY +
Sbjct: 205 NSLDHDPDLQH-IPIF-AVSTKFFNSMTSRFYGR 236
>At1g52087.1 68414.m05877 hypothetical protein
Length = 671
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 50 QTSNISCRSIPKQAALRKTQRRTYSMQSNKSPVPGHDRRASDQQEEP-DVIHETRELD 220
++ N++ +P + ++ + QS S P H SD+Q E D+ H++ + D
Sbjct: 354 RSRNLAFGFVPLSSRSKRKKSSEVPTQSQASENPSHSHTLSDEQNEDFDIEHQSEQKD 411
>At1g35110.1 68414.m04352 Ulp1 protease family protein similar to
At5g28170, At1g44880, At3g42530, At4g19320, At5g36020,
At4g03970, At3g43010, At2g10350 ; contains Pfam profile
PF02902: Ulp1 protease family, C-terminal catalytic
domain
Length = 1311
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 50 QTSNISCRSIPKQAALRKTQRRTYSMQSNKSPVPGHDRRASDQQEEP-DVIHETRELD 220
++ N++ +P + ++ + QS S P H SD+Q E D+ H++ + D
Sbjct: 585 RSRNLAFGFVPLSSRSKRQKSLEVPTQSQSSENPSHSHTLSDEQNEDFDIEHQSEQKD 642
>At5g08120.1 68418.m00947 myosin heavy chain-related identical to
myosin heavy chain-like protein GI:1732515 from
[Arabidopsis thaliana]
Length = 326
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 146 VPGHDRRASDQQEEPDVIHETRELDSGAGLLAG 244
VPG +R DQ+ DV++ +RE D A LAG
Sbjct: 103 VPGRKKR--DQEGNDDVMNNSREDDENAKALAG 133
>At2g31865.2 68415.m03893 poly (ADP-ribose) glycohydrolase (PARG)
family protein contains Pfam profile: PF05028 poly
(ADP-ribose) glycohydrolase (PARG)
Length = 532
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +1
Query: 10 AFSGWINSNLEHDPDLKHLLPIDPEASSSTK 102
AFSG+++ +++ D+KH DPEASSSTK
Sbjct: 376 AFSGYMHQ-CKYNIDVKH----DPEASSSTK 401
>At1g23690.1 68414.m02991 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220; expression
supported by MPSS
Length = 273
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 13 FSGWINSNLEHDP---DLKHLLPIDPEASSSTKNSKTDLFYAK 132
F GWIN NL+ P + K +D +++ +K +Y K
Sbjct: 7 FVGWINQNLQQQPLKDESKRSENVDSNSATENDTNKRAFYYDK 49
>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
(IP5PII) nearly identical to inositol polyphosphate
5-phosphatase II [Arabidopsis thaliana] GI:10444263
isoform contains an AT-acceptor splice site at intron 6
Length = 613
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 375 PGQCSSVIWLKRPIRMICHRRPSTR 301
P C ++WL + IR C++R R
Sbjct: 546 PAWCDRILWLGKGIRQECYKRSEIR 570
>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
(IP5PII) nearly identical to inositol polyphosphate
5-phosphatase II [Arabidopsis thaliana] GI:10444263
isoform contains an AT-acceptor splice site at intron 6
Length = 646
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 375 PGQCSSVIWLKRPIRMICHRRPSTR 301
P C ++WL + IR C++R R
Sbjct: 579 PAWCDRILWLGKGIRQECYKRSEIR 603
>At4g02510.1 68417.m00343 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1503
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 167 ASDQQEEPDVIHETRELDSGAGLLAGHRVYIVNIDAHDLAKGKPHLV 307
A+ +E+ + +ELDS + ++G+ + D D K KP+LV
Sbjct: 35 AAADKEDGGAVSSAKELDSSSEAVSGNSDKVGADDLSDSEKEKPNLV 81
>At5g52890.1 68418.m06564 AT hook motif-containing protein contains
Pfam profile PF02178: AT hook motif
Length = 357
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 310 RSPVADHPNWSLQPDNAGALPRTHGIAE*PGTHRGSVGSVPGGHPAA-LGQPPAAVRRRH 486
++P+ + N Q D+ G+ P+T + S+P HP G A+ R+
Sbjct: 117 QTPLQEKKNAGNQTDDIGSEPQTDALIADKNQSATCTTSLPDDHPMRDAGVGSVAMGERN 176
Query: 487 AALRQLPDDVADS 525
+ L DVA S
Sbjct: 177 DPIDTLMKDVAGS 189
>At5g47600.1 68418.m05875 heat shock protein-related contains weak
similarity to Heat shock 22 kDa protein, mitochondrial
precursor (Swiss-Prot:P46254) [Pisum sativum]
Length = 131
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 257 IVNIDAHDLAKGKPHLVLGLLWQIIRIGLFNQITLEHCPGLTELLNDQERI 409
I N +A+D+ K K L+ G+LW IT+ PG +N +ERI
Sbjct: 88 IFNPEAYDVKKTKVKLINGVLW----------ITVPKIPGKNASINVKERI 128
>At4g05160.1 68417.m00775 4-coumarate--CoA ligase, putative /
4-coumaroyl-CoA synthase, putative similar to 4CL2
[gi:12229665] from Arabidopsis thaliana, 4CL1
[gi:12229631] from Nicotiana tabacum; contains Pfam
AMP-binding enzyme domain PF00501; acyl-activating
enzyme superfamily; identical to cDNA 4-coumarate-CoA
ligase-like protein (At4g05160) GI:29893226
Length = 544
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 460 VDPAQQDGLRGQSQQILDAFLVIQQFRESGAVLQRYLVEETNSDDLPQETE 308
V PA+ +GL ILDA ++ E+G V ++V NS Q+ +
Sbjct: 451 VAPAELEGLLVSHPDILDAVVIPFPDEEAGEVPIAFVVRSPNSSITEQDIQ 501
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,069,478
Number of Sequences: 28952
Number of extensions: 243873
Number of successful extensions: 922
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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