Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0129
(430 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18600.1 68415.m02166 RUB1-conjugating enzyme, putative stron... 57 6e-09
At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E... 33 0.11
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)... 33 0.11
At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E... 33 0.11
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E... 31 0.44
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ... 31 0.44
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E... 30 0.58
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)... 30 0.58
At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E... 30 0.77
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 2.3
At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family pro... 28 3.1
At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger) fa... 27 4.1
At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger) fa... 27 4.1
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E... 27 4.1
At1g53450.2 68414.m06059 expressed protein 27 4.1
At1g53450.1 68414.m06058 expressed protein 27 4.1
At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative ... 27 7.1
At2g35540.1 68415.m04353 DNAJ heat shock N-terminal domain-conta... 27 7.1
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E... 27 7.1
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E... 27 7.1
At5g11350.1 68418.m01325 endonuclease/exonuclease/phosphatase fa... 26 9.4
At1g74770.1 68414.m08663 expressed protein 26 9.4
>At2g18600.1 68415.m02166 RUB1-conjugating enzyme, putative strong
similarity to gi:6635457 RUB1 conjugating enzyme
[Arabidopsis thaliana]; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 185
Score = 56.8 bits (131), Expect = 6e-09
Identities = 30/68 (44%), Positives = 40/68 (58%)
Frame = -3
Query: 278 RADSQEVLPPVKNMYWNCXXXX*EPNPEDPLNKEAADELQSNRRLFEQHVQRAMRGGYVG 99
R D + VL + + + EPN EDPLN EAA L+ N + FE +V+RAM GG VG
Sbjct: 119 REDWKPVLN-INTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVRRAMMGGQVG 177
Query: 98 TSYFERCL 75
+ F RC+
Sbjct: 178 QTSFPRCM 185
>At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E2;
identical to gi:431265, SP:P42748
Length = 187
Score = 32.7 bits (71), Expect = 0.11
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 206 PNPEDPLNKEAADELQSNRRLFEQHVQ 126
PNP DPLN EAA + +R +EQ V+
Sbjct: 114 PNPSDPLNGEAAALMMRDRPAYEQRVK 140
>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
E2; UbcAT3; identical to gi:2129757, S46656
Length = 167
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 206 PNPEDPLNKEAADELQSNRRLFEQHVQRAMR 114
PN E P N EAA E + NR F + V R +R
Sbjct: 131 PNDESPANVEAAKEWRDNRAEFRKKVSRCVR 161
>At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E2;
identical to gi:431269, SP:P42749
Length = 185
Score = 32.7 bits (71), Expect = 0.11
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 206 PNPEDPLNKEAADELQSNRRLFEQHVQ 126
PNP DPLN EAA + +R +EQ V+
Sbjct: 114 PNPSDPLNGEAAALMMRDRPTYEQRVK 140
>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
identical to gi:431261, SP:P42746
Length = 150
Score = 30.7 bits (66), Expect = 0.44
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 209 EPNPEDPLNKEAADELQSNRRLFEQHVQRAMRGGYV 102
+PNP+ P N EAA N+R + + V + YV
Sbjct: 115 DPNPDSPANAEAARLFSENKREYNRKVIEIVEQSYV 150
>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
nearly identical to SCARECROW [Arabidopsis thaliana]
GI:1497987
Length = 653
Score = 30.7 bits (66), Expect = 0.44
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 405 YRAPPRDIRSKVSSNSSTAAPPFKPKRITASRP 307
++ PP I+ + NSST APP +P+ +TA+ P
Sbjct: 230 HKPPPPPIQQQERENSSTDAPP-QPETVTATVP 261
>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
identical to gi:992703, SP:P42747
Length = 198
Score = 30.3 bits (65), Expect = 0.58
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 206 PNPEDPLNKEAADELQSNRRLFEQHVQRAMR 114
PN E P N EAA E + R F++ V R +R
Sbjct: 162 PNDESPANVEAAKEWRDKRDEFKKKVSRCVR 192
>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
E2; identical to gi:992706
Length = 166
Score = 30.3 bits (65), Expect = 0.58
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 206 PNPEDPLNKEAADELQSNRRLFEQHVQRAMR 114
PN E P N EAA E + R F++ V R +R
Sbjct: 130 PNDESPANVEAAKEWREKRDEFKKKVSRCVR 160
>At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E2;
identical to gi|431267, SP:P42750, PIR:S52661; contains
a ubiquitin-conjugating enzymes active site (PDOC00163)
Length = 183
Score = 29.9 bits (64), Expect = 0.77
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 206 PNPEDPLNKEAADELQSNRRLFEQHVQ 126
PNP DP N EAA L +R +E V+
Sbjct: 114 PNPSDPFNGEAASLLMRDRAAYELKVK 140
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 396 PPRDIRSKVSSNSSTAA-PPFKPKRITASRP 307
PP I S SSNSST A PP + + T S P
Sbjct: 5 PPLPILSPPSSNSSTTAPPPLQTQPTTPSAP 35
>At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family
protein similar to Ubiquitin-conjugating enzyme E2-16
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) from {Schizosaccharomyces pombe}
SP|P46595, {Caenorhabditis elegans} SP|P35129; contains
Pfam profile PF00179: Ubiquitin-conjugating enzyme
Length = 154
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 209 EPNPEDPLNKEAADELQSNRRLFEQHVQ 126
+PNP+DPL E ++NR F+Q +
Sbjct: 118 KPNPDDPLVPEIGQLFKNNRFQFDQRAR 145
>At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 546
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -1
Query: 211 RNQTLK--IPSTRKQRTSSKATGDFSNNTFRELCEAATSAHLISNDASNENLHT 56
RN T+ +P T TSS S +T+R + S H+ S+ +L T
Sbjct: 315 RNPTVSHGVPGTSTLSTSSSRFSHRSTSTYRSSSHGSRSGHVASSSGDRSHLVT 368
>At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 546
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -1
Query: 211 RNQTLK--IPSTRKQRTSSKATGDFSNNTFRELCEAATSAHLISNDASNENLHT 56
RN T+ +P T TSS S +T+R + S H+ S+ +L T
Sbjct: 315 RNPTVSHGVPGTSTLSTSSSRFSHRSTSTYRSSSHGSRSGHVASSSGDRSHLVT 368
>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
identical to gi:2689242, SP:P42745
Length = 152
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 209 EPNPEDPLNKEAADELQSNRRLFEQHVQRAM 117
+PNP P N EAA ++R + + V+ +
Sbjct: 115 DPNPNSPANSEAARMFSESKREYNRRVREVV 145
>At1g53450.2 68414.m06059 expressed protein
Length = 453
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 221 KNNSNTCFLLVVGPLVSLRGGGYHRPAYFGREAVMRFG 334
+++S++ FLL +GPL+ LR P + ++ ++ +G
Sbjct: 206 RDDSSSLFLLQLGPLLFLRDSTLLLPVHLSKQHLLWYG 243
>At1g53450.1 68414.m06058 expressed protein
Length = 453
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 221 KNNSNTCFLLVVGPLVSLRGGGYHRPAYFGREAVMRFG 334
+++S++ FLL +GPL+ LR P + ++ ++ +G
Sbjct: 206 RDDSSSLFLLQLGPLLFLRDSTLLLPVHLSKQHLLWYG 243
>At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative
similar to Ubiquitin-conjugating enzyme E2
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
from {Xenopus laevis} SP|P51669, {Schizosaccharomyces
pombe} SP|P46595, {Caenorhabditis elegans} SP|P35129;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 409
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 209 EPNPEDPLNKEAADELQSNRRLFE 138
EPNP+D L E + E + NR+ F+
Sbjct: 130 EPNPDDGLMCEVSREYKYNRQTFD 153
>At2g35540.1 68415.m04353 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226:
DnaJ domain
Length = 575
Score = 26.6 bits (56), Expect = 7.1
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = -1
Query: 220 FFFRNQTLKIPSTRKQRTSSKATGDFSNNTFRELCEAATSAHLISNDASNENL--HTCK 50
F N+ ++ S + + S + GD +TF +C S H +NL TCK
Sbjct: 112 FKLLNEAFRVFSDKGEMVSGGSGGD-ETSTFSAVCSGCRSVHKFDRKYLGQNLMCPTCK 169
>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 209 EPNPEDPLNKEAADELQSNRRLFEQHVQ 126
+PNP P N EAA ++R + + V+
Sbjct: 115 DPNPNSPANSEAARMYSESKREYNRRVR 142
>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 209 EPNPEDPLNKEAADELQSNRRLFEQHVQ 126
+PNP P N EAA ++R + + V+
Sbjct: 115 DPNPNSPANSEAARMYSESKREYNRRVR 142
>At5g11350.1 68418.m01325 endonuclease/exonuclease/phosphatase
family protein contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 754
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -3
Query: 341 PSNRNALLLHGRNRQGGGTHPRADSQEVLPPVKNMYWNCXXXX*EPNPEDPLNKEAADEL 162
PS + + L G G H S + + P +NM +C P+D N A++L
Sbjct: 454 PSEKTSELPCGDTILAG--HEATSSSDQVLPCENMASDCQFGIENRKPDDSGNLSTAEDL 511
Query: 161 QS 156
S
Sbjct: 512 SS 513
>At1g74770.1 68414.m08663 expressed protein
Length = 985
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 187 STRKQRTSSKATGDFSNNTFRELCEAATSAHLISNDASN 71
S +K+ T +A+G FSN T +LC+ + + D S+
Sbjct: 522 SCQKEHTE-EASGSFSNQTQLQLCKVSKDVYPRKKDKSS 559
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,448,261
Number of Sequences: 28952
Number of extensions: 202674
Number of successful extensions: 597
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -