Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0119
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43350.1 68416.m04582 helicase-related low similarity to SP|Q...    30   1.9  
At4g13580.1 68417.m02115 disease resistance-responsive family pr...    29   2.5  
At2g14050.1 68415.m01563 minichromosome maintenance family prote...    29   3.3  
At2g13650.2 68415.m01505 GDP-mannose transporter (GONST1) identi...    29   3.3  
At2g13650.1 68415.m01504 GDP-mannose transporter (GONST1) identi...    29   3.3  
At1g55240.1 68414.m06309 expressed protein contains Pfam profile...    29   3.3  
At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein ...    29   4.4  
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa...    28   5.8  

>At3g43350.1 68416.m04582 helicase-related low similarity to
           SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 830

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/79 (27%), Positives = 40/79 (50%)
 Frame = -2

Query: 531 RVRAVLLINQSVINSNDSCLRVDLERDRCAVSFQAVRDSLCAGLVAVHPGDGRTLQSVGG 352
           RV  ++LI + +I  +D+ L   + R + A+S         A  + ++   G+TL+SVG 
Sbjct: 635 RVGKIVLIPRMLITPSDTRLPFKMRRKQFALSV--------AFAMTINKSQGQTLESVGL 686

Query: 351 HEPVPLHVHNRRQVEAWRL 295
           + P P+  H +  V   R+
Sbjct: 687 YLPRPVFSHGQLYVAISRV 705



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 24/88 (27%), Positives = 42/88 (47%)
 Frame = -2

Query: 531 RVRAVLLINQSVINSNDSCLRVDLERDRCAVSFQAVRDSLCAGLVAVHPGDGRTLQSVGG 352
           RV  ++LI + +I   D+ L   + R + A+S         A  + ++   G+TL+SVG 
Sbjct: 751 RVGKIVLIPRMLITPLDTRLPFKMRRKQFALSV--------AFAMTINKSQGQTLESVGL 802

Query: 351 HEPVPLHVHNRRQVEAWRLL*RCQNKTS 268
           + P P+  H +  V   R+  +   K S
Sbjct: 803 YLPRPVFSHGQLYVAISRVTSKTGTKFS 830


>At4g13580.1 68417.m02115 disease resistance-responsive family
           protein contains similarity to pathogenesis-related
           protein [Pisum sativum] gi|4585273|gb|AAD25355
          Length = 244

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 225 DYCDHV--YGSMAHGSGMSCSDIVTAASRLPPACDYARGEELVRALQHF 365
           +Y D++  YG    GS MS   +     R   AC +A    L+ A QHF
Sbjct: 180 EYNDNLNFYGIYRIGSAMSHLSVTGGTGRFKNACGFAEVRPLIPAGQHF 228


>At2g14050.1 68415.m01563 minichromosome maintenance family protein
           / MCM family protein low similarity to SP|P49736 DNA
           replication licensing factor MCM2 {Homo sapiens};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 653

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 169 AALTNEA--TQAKDTDSGGQTITVIMSMGVWLTVAGCLVL 282
           A L+N A  T    + S G T+T +   G W+  AG LVL
Sbjct: 372 AKLSNRAVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVL 411


>At2g13650.2 68415.m01505 GDP-mannose transporter (GONST1) identical
           to GDP-mannose transporter SP:Q941R4 from [Arabidopsis
           thaliana]
          Length = 284

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 381 DGRTLQSVGGHEPVPLHVHNR 319
           DG+T++S GG +P+P  +HNR
Sbjct: 13  DGKTVKS-GGDKPIPRKIHNR 32


>At2g13650.1 68415.m01504 GDP-mannose transporter (GONST1) identical
           to GDP-mannose transporter SP:Q941R4 from [Arabidopsis
           thaliana]
          Length = 333

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 381 DGRTLQSVGGHEPVPLHVHNR 319
           DG+T++S GG +P+P  +HNR
Sbjct: 13  DGKTVKS-GGDKPIPRKIHNR 32


>At1g55240.1 68414.m06309 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 311

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 235 IMSMGVWLTVAGCLVLTSSQQPPGFHL 315
           I   GVWL V GC++ T S  P G ++
Sbjct: 188 IAFQGVWLIVIGCMLYTPSLIPKGCYI 214


>At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 257

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 558 HTTAHRKCSQ*SPTTQESDPKYLNHQYPHFRFHLTPTWPLQPKIPFHHHKKLPNWRT 728
           H  AH++  Q     + S   YL+H  PH   H+         +  HHH+  P+W T
Sbjct: 113 HQNAHKRERQ--HAKRGSMTSYLHHHQPHDPHHIYGF------LNNHHHRHYPSWTT 161


>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 359

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
 Frame = +3

Query: 627 NHQYPHFRFHLTPTWPLQPKI------PFHHHKKLPNWRTT 731
           ++ Y +  +HL+P  P QP+I       +H+H + P + TT
Sbjct: 44  HYDYNYSNYHLSPPLPPQPQINSCSYGHYHYHPQPPQYFTT 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,798,138
Number of Sequences: 28952
Number of extensions: 409288
Number of successful extensions: 1223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)