Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0102
(406 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61060.1 68418.m07662 histone deacetylase family protein simi... 32 0.17
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 30 0.51
At5g20140.1 68418.m02397 SOUL heme-binding family protein contai... 28 2.1
At4g01730.1 68417.m00224 zinc finger (DHHC type) family protein ... 28 2.1
At1g01430.1 68414.m00058 expressed protein similar to hypothetic... 28 2.7
At5g11610.2 68418.m01356 exostosin family protein contains Pfam ... 27 3.6
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ... 27 3.6
At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR... 27 4.8
At3g06430.1 68416.m00741 pentatricopeptide (PPR) repeat-containi... 27 4.8
At1g26090.1 68414.m03182 hypothetical protein 27 4.8
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 27 6.3
At4g01080.1 68417.m00146 expressed protein 27 6.3
At3g61720.1 68416.m06919 C2 domain-containing protein contains I... 27 6.3
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ... 26 8.3
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 26 8.3
At1g02720.2 68414.m00224 glycosyl transferase family 8 protein l... 26 8.3
At1g02720.1 68414.m00223 glycosyl transferase family 8 protein l... 26 8.3
>At5g61060.1 68418.m07662 histone deacetylase family protein similar
to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo sapiens};
contains Pfam profile PF00850: Histone deacetylase
family
Length = 660
Score = 31.9 bits (69), Expect = 0.17
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = -2
Query: 198 TTDSETSDDAMRLVDRMKQLARCNP--VCIEQHQI 100
++DSET D+A L+D+M +L+ NP +E HQ+
Sbjct: 405 SSDSETEDNAQGLLDQMSKLSIENPQGTLLENHQV 439
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 30.3 bits (65), Expect = 0.51
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = -2
Query: 282 VKLSSRHFQSFHRC---LDGGNPERALSLGMTTDSETSDDAMRL-VDRMKQLARCNPVCI 115
++L R Q F C LD N E ++LG+ MR +DRM+Q P C
Sbjct: 182 LQLYKRALQVFPGCPAALDPDNVEALVALGIMDLQANDSIGMRKGMDRMQQAFEIYPYCA 241
Query: 114 EQHQILGFQNFFTHEPF 64
L FFT + F
Sbjct: 242 SALNYLANHFFFTGQHF 258
>At5g20140.1 68418.m02397 SOUL heme-binding family protein contains
PFam profile PF04832: SOUL heme-binding protein
Length = 378
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 146 FIRSTSRMASSDVSESVVMPRDRALSGFP-PSKHR*N 253
F ++T SSDVS +V+P + LS P P++ + N
Sbjct: 267 FTQTTDTQLSSDVSVQIVIPSGKDLSSLPMPNEEKVN 303
>At4g01730.1 68417.m00224 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 499
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = -2
Query: 312 VTYASVMNAYVKLSSRHFQSFHRCLDG 232
++Y S+ + VK SS+H ++ +RC++G
Sbjct: 148 ISYCSLCDLEVKRSSKHCRTCNRCVEG 174
>At1g01430.1 68414.m00058 expressed protein similar to hypothetical
protein GB:CAB80917 GI:7267605 from [Arabidopsis
thaliana]
Length = 456
Score = 27.9 bits (59), Expect = 2.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 285 YVKLSSRHFQSFHRCLDGGNPE 220
Y +S RH Q + CL G P+
Sbjct: 115 YTNVSCRHIQDYQNCLKNGRPD 136
>At5g11610.2 68418.m01356 exostosin family protein contains Pfam
domain, PF03016: Exostosin family
Length = 453
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 343 YTEYLLYKYFCDLCVGYECLC 281
Y Y+ FC GYECLC
Sbjct: 426 YIRYMKRSRFCVCAKGYECLC 446
>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 565
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 306 YASVMNAYVKLSSRHFQSFHRCLDG 232
+ S+ NA V++ S+H +S +C+DG
Sbjct: 145 FCSLCNAEVRMFSKHCRSCGKCVDG 169
>At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1170
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 367 SSFFFNTCYTEYLLYKYFCDLCVG 296
S FFNTCY Y++ +F VG
Sbjct: 1003 SGAFFNTCYPGYIVPSWFDHQAVG 1026
>At3g06430.1 68416.m00741 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 486
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 207 LGMTTDSETSDDAMRLVDRMKQLARCNP 124
L T S DDA ++D+MK +C P
Sbjct: 166 LAAYTRSNLIDDAFSILDKMKSFPQCQP 193
>At1g26090.1 68414.m03182 hypothetical protein
Length = 455
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 98 RIWCCSIHTGLHLASCFIRSTSRMASSDVSESVVMPRDRALSGFP 232
R W C++ G H++ F S+S + +S + ++ +P A + P
Sbjct: 306 RYWGCTVQAGSHVSGAFAISSSHL-TSQIPKADFVPLPFASASVP 349
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 315 FVTYASVMNAYVKLSSRHFQSFHRCLDGGNPERAL 211
FVT +NA L+S HF H L+ N + ++
Sbjct: 716 FVTKQEALNAKKALASTHFYGRHLVLEWANDDNSM 750
>At4g01080.1 68417.m00146 expressed protein
Length = 442
Score = 26.6 bits (56), Expect = 6.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 285 YVKLSSRHFQSFHRCLDGGNPE 220
Y ++ RH Q F CL G P+
Sbjct: 107 YTNVTCRHIQDFQNCLLNGRPD 128
>At3g61720.1 68416.m06919 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 795
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 262 FPIVSSMFGRRKPREGPVSRHD 197
FP + G R PR GP S HD
Sbjct: 14 FPKLGGERGARNPRYGPTSSHD 35
>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = -1
Query: 406 TTHYRANWVPGPPSSFFFNTCYTEYLLYKYFCDLC---VGYECL 284
TTH ++ P F N C T+ YFC C + +EC+
Sbjct: 237 TTHEHQLYLLSKPLGFTCNACGTQADQSPYFCLQCNFMIHWECI 280
>At1g58230.1 68414.m06618 WD-40 repeat family protein /
beige-related contains Pfam PF00400: WD domain, G-beta
repeat; similar to Lipopolysaccharide-responsive and
beige-like anchor protein (CDC4-like protein)
(Beige-like protein) (SP:P50851) [Homo sapiens}
Length = 1280
Score = 26.2 bits (55), Expect = 8.3
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -2
Query: 357 FSTLAILNTYYISIFVTYASVMNAYVKLSSRHFQSFHRCLDGGNPERA 214
FS I + YY S + + SV+ Y L F S HR L GG + A
Sbjct: 703 FSDPDIPSFYYGSHYSSMGSVL--YYLLRLEPFTSLHRSLQGGKFDHA 748
>At1g02720.2 68414.m00224 glycosyl transferase family 8 protein low
similarity to putative glycosyl transferase from
Neisseria gonorrhoeae [GI:595812]; contains Pfam
glycosyl transferase family 8 domain PF01501
Length = 361
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 177 PMFPNLLSCRETGPSLGFLRPNI 245
PMF N CR +G G PN+
Sbjct: 58 PMFRNAEQCRSSGEDSGVCNPNL 80
>At1g02720.1 68414.m00223 glycosyl transferase family 8 protein low
similarity to putative glycosyl transferase from
Neisseria gonorrhoeae [GI:595812]; contains Pfam
glycosyl transferase family 8 domain PF01501
Length = 361
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 177 PMFPNLLSCRETGPSLGFLRPNI 245
PMF N CR +G G PN+
Sbjct: 58 PMFRNAEQCRSSGEDSGVCNPNL 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,617,400
Number of Sequences: 28952
Number of extensions: 197620
Number of successful extensions: 545
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -