Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0091
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA he...    32   0.41 
At4g20850.1 68417.m03025 subtilase family protein contains simil...    31   0.54 
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote...    31   0.54 
At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similari...    31   0.94 
At5g46730.1 68418.m05757 glycine-rich protein                          30   1.2  
At4g11300.1 68417.m01826 expressed protein                             30   1.2  
At3g13065.1 68416.m01632 leucine-rich repeat transmembrane prote...    30   1.6  
At3g63220.2 68416.m07103 kelch repeat-containing F-box family pr...    28   5.0  
At3g63220.1 68416.m07102 kelch repeat-containing F-box family pr...    28   5.0  

>At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA
           helicase, putative nearly identical to HUA enhancer 2
           [Arabidopsis thaliana] GI:16024936
          Length = 995

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 552 ITSVGDNGSGAIGSVGDHGGGYVTDQLL 469
           + +V  N S   GS   HGGGY+ D LL
Sbjct: 626 VVNVVKNSSVGTGSASSHGGGYIVDTLL 653


>At4g20850.1 68417.m03025 subtilase family protein contains
           similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
           (TPP-II) (Tripeptidyl aminopeptidase)
           (Swiss-Prot:P29144) [Homo sapiens]
          Length = 1380

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -2

Query: 648 LAQRLRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGG 490
           L +RLR  S +   G+R     +SA+ C SS   +    G G  G  G  GGG
Sbjct: 44  LHRRLRRRSCSRSRGIRLRRSGFSAMPCSSSDTLTASRVGCGGGGGGGAVGGG 96


>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1007

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 585 HWSAISCVSSGITSVGDNGSGAIGS 511
           +W  ++C S G+TS+  NG G +GS
Sbjct: 46  NWYGVTCSSGGVTSIDLNGFGLLGS 70


>At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similarity
           to elicitor inducible beta-1,3-glucanase NtEIG-E76
           [Nicotiana tabacum] GI:11071974
          Length = 222

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 104 TATDSLPTASEPTASQPTASEPTASQPTA 190
           T T   PT   PT   PT   PT+  PT+
Sbjct: 121 TPTSGTPTTGTPTTGTPTTGTPTSGTPTS 149



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 104 TATDSLPTASEPTASQPTASEPTASQPTA 190
           T T   PT+  PT   PT   PT   PT+
Sbjct: 116 TPTTGTPTSGTPTTGTPTTGTPTTGTPTS 144



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 104 TATDSLPTASEPTASQPTASEPTASQPT 187
           T T   PT   PT+  PT   PT   PT
Sbjct: 111 TPTTGTPTTGTPTSGTPTTGTPTTGTPT 138



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 104 TATDSLPTASEPTASQPTASEPTASQPT 187
           +++   PT   PT   PT+  PT   PT
Sbjct: 106 SSSSGTPTTGTPTTGTPTSGTPTTGTPT 133



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 104 TATDSLPTASEPTASQPTASEPTASQP 184
           T T   PT   PT   PT+  PT+  P
Sbjct: 126 TPTTGTPTTGTPTTGTPTSGTPTSGFP 152


>At5g46730.1 68418.m05757 glycine-rich protein 
          Length = 290

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/42 (40%), Positives = 17/42 (40%)
 Frame = -2

Query: 612 GSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVGDHGGGY 487
           G G  G   H  A      G    G  G GA G  G HGGGY
Sbjct: 194 GGGAGGGGSHGGAGGYGGGG--GGGSGGGGAYGGGGAHGGGY 233


>At4g11300.1 68417.m01826 expressed protein
          Length = 371

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 624 SLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAI 517
           S  GGSG R  ++ WS+    S G +  G  G+G +
Sbjct: 171 SSGGGSGRRSSTDQWSSFGRRSGGSSGGGGGGAGCV 206


>At3g13065.1 68416.m01632 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich repeat transmembrane
           protein kinase 1 GB:AAC27894 from [Zea mays]
          Length = 646

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 654 MGLAQRLRDHSLAGGSGVRGMSEHWSAISCVSSGITSVGDNGSGAIGSVG 505
           M    +L+  S +GG       + W  I+C  S +T +  +G G  GS+G
Sbjct: 1   MNSPSKLKGWSSSGGDPC---GDSWDGITCKGSSVTEIKVSGRGLSGSLG 47


>At3g63220.2 68416.m07103 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 352

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 585 HWSAISCVSSGITSVGDNGSGAIGSV-GDHGGGYVTDQL 472
           H+ A++  ++G+  V   GS A+  V GDH G + TDQ+
Sbjct: 101 HFGAVT--TAGMLFVLGGGSDAVSPVTGDHDGTFATDQV 137


>At3g63220.1 68416.m07102 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 345

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 585 HWSAISCVSSGITSVGDNGSGAIGSV-GDHGGGYVTDQL 472
           H+ A++  ++G+  V   GS A+  V GDH G + TDQ+
Sbjct: 94  HFGAVT--TAGMLFVLGGGSDAVSPVTGDHDGTFATDQV 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.125    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,330,322
Number of Sequences: 28952
Number of extensions: 84529
Number of successful extensions: 582
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)