Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0015
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identica... 32 0.31
At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identica... 31 0.53
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 30 1.2
At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1 GI... 29 2.2
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 29 2.8
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 29 2.8
At1g77970.1 68414.m09086 hydroxyproline-rich glycoprotein family... 28 5.0
At3g19070.1 68416.m02422 cell wall protein-related similar to ve... 28 6.6
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 28 6.6
At5g66570.1 68418.m08392 oxygen-evolving enhancer protein 1-1, c... 27 8.7
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 27 8.7
At1g02290.1 68414.m00171 expressed protein 27 8.7
>At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identical
to auxin response factor 1 GI:2245378 from [Arabidopsis
thaliana]
Length = 662
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 362 VSNPRTVS--KLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEP 535
V P VS +L P + S PS++PQ P+ + P P +GP + P+ VW P
Sbjct: 341 VFRPERVSPWELEPLVANSTPSSQPQPPQRNKRP---RPPGLPSPATGP-SGPDGVWKSP 396
>At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identical
to auxin response factor 1 GI:2245378 from [Arabidopsis
thaliana]
Length = 665
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 362 VSNPRTVS--KLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEP 535
V P VS +L P + S PS++PQ P+ + SGPV P+ VW P
Sbjct: 341 VFRPERVSPWELEPLVANSTPSSQPQPPQRNKRPRPPGLPSPATGPSGPVT-PDGVWKSP 399
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 166 RKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISITIMLIILLCPLERTQLQLVQQFQT 345
R R C +I G+ P +KPTR++ + S K T L L P + +L +
Sbjct: 46 RIRLCHKIQVAFGGVEPASKPTRIADHNSEK-----TAPLKALALPGPKGSKELRKSATE 100
Query: 346 RAAMVG--LKPKD 378
+A +VG L P+D
Sbjct: 101 KALVVGPTLPPRD 113
>At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1
GI:5566292 from [Drosophila melanogaster]; contains
prosite evidence: PS00383: Tyrosine specific protein
phosphatases active site
Length = 632
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 100 SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPT-RVSRNRSSKAKI 267
S G +W+K+ K Q+ P + + +++ GLH PTK + V +RSS ++
Sbjct: 98 SSGLSSWAKSFKFQQQDPNRTDSGMSAFTRFTSELGLHLPTKGSEEVGDSRSSNTQV 154
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 601 INYTCKLGSMDTILGKTTKLANLTG 675
I YTCK+ +D ILG T K+ + G
Sbjct: 352 ILYTCKISYVDAILGTTLKVPTVDG 376
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 601 INYTCKLGSMDTILGKTTKLANLTG 675
I YTCK+ +D ILG T K+ + G
Sbjct: 346 ILYTCKISYIDAILGTTLKVPTVDG 370
>At1g77970.1 68414.m09086 hydroxyproline-rich glycoprotein family
protein
Length = 76
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 407 ESIPSAEPQ-LPRSGSKSVSRATEQFPEPKSGPVARPEP 520
E P +EP+ P S KS S T PEP P+ P P
Sbjct: 23 EPSPESEPEPAPTSKPKSTSTPTP-IPEPAPTPIPEPAP 60
>At3g19070.1 68416.m02422 cell wall protein-related similar to
vegetative cell wall protein gp1 [Chlamydomonas
reinhardtii] gi|12018147|gb|AAG45420;
Length = 346
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Frame = +2
Query: 395 PTIRE---SIPSAEPQLPRSGSKSVSRATEQFPEPKS---GPVARP--EPVWSEPT 538
P++RE S PS+ Q P S S +R + FP P S P P P EPT
Sbjct: 188 PSLREFFPSSPSSSIQPPESSSSKRARLSNIFPSPLSSSPSPFVNPFLRPQAQEPT 243
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/45 (22%), Positives = 21/45 (46%)
Frame = +2
Query: 398 TIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSE 532
++ E++ P +P G+ ++ E P + PEP+W +
Sbjct: 304 SLAEALDMQPPVMPEDGTTRLTAGDEASPSGTVKDTSVPEPIWDD 348
>At5g66570.1 68418.m08392 oxygen-evolving enhancer protein 1-1,
chloroplast / 33 kDa subunit of oxygen evolving system
of photosystem II (PSBO1) (PSBO) identical to SP:P23321
Oxygen-evolving enhancer protein 1-1, chloroplast
precursor (OEE1) (33 kDa subunit of oxygen evolving
system of photosystem II) (OEC 33 kDa subunit) (33 kDa
thylakoid membrane protein) [Arabidopsis thaliana]
Length = 332
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = -2
Query: 534 GSLHTGSGLATGPDFG----SGNCSVALETDFEPDRGSCGSALGIDSLIVGQSFETVLG 370
GS H S A G FG S + + ++DF+ G C A+ I + S V G
Sbjct: 24 GSSHLRSTQAVGKSFGLETSSARLTCSFQSDFKDFTGKCSDAVKIAGFALATSALVVSG 82
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/68 (29%), Positives = 28/68 (41%)
Frame = +2
Query: 317 SYS*SNNSKPGQLWWVSNPRTVSKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKS 496
S+S S P L SN ++ L I ++ P P P S+S+ Q P P+
Sbjct: 540 SFSPSQPPPPPPLPSFSNRDPLTTLHQPINKTPPPPPPPPPPLPSRSIPPPLAQPPPPRP 599
Query: 497 GPVARPEP 520
P P P
Sbjct: 600 PPPPPPPP 607
>At1g02290.1 68414.m00171 expressed protein
Length = 443
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 112 LTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRS 252
L WS T+T K + LNR KE+ S P V RNRS
Sbjct: 167 LIWSGRTQTGNLKLLDLNRV-PSKEMDSATCRFKTPNVVKPVERNRS 212
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,193,653
Number of Sequences: 28952
Number of extensions: 259515
Number of successful extensions: 907
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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