Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0025
(588 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27080.2 68415.m03254 harpin-induced protein-related / HIN1-r... 30 1.3
At2g27080.1 68415.m03253 harpin-induced protein-related / HIN1-r... 30 1.3
At3g06150.1 68416.m00707 expressed protein 29 2.3
At3g47330.1 68416.m05144 hypothetical protein contains Pfam prof... 29 3.0
At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein si... 29 3.0
At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat... 28 4.0
At5g44415.1 68418.m05439 hypothetical protein contains Pfam prof... 28 5.3
At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein / ... 28 5.3
At5g40670.1 68418.m04937 PQ-loop repeat family protein / transme... 27 7.0
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 27 7.0
At3g25180.1 68416.m03144 cytochrome P450 family protein similar ... 27 9.3
At3g24870.1 68416.m03119 expressed protein 27 9.3
At2g29310.1 68415.m03560 tropinone reductase, putative / tropine... 27 9.3
At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein ... 27 9.3
>At2g27080.2 68415.m03254 harpin-induced protein-related /
HIN1-related / harpin-responsive protein-related
contains 1 transmembrane domain; similar to hin1 homolog
(GI:13122296) [Arabidopsis thaliana]; similar to hin1
(GI:22830759) [Nicotiana tabacum]
Length = 260
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -2
Query: 335 HRGRAWSR--TNRKYSLCCICTF*IRHYSSAVGLLVVLQIQSSSAIFLLVRFFKVKRFPD 162
HR SR TNR CC C+F +AV +L+VL S + ++L+ R P
Sbjct: 56 HRFEQLSRKKTNRSNCRCCFCSF-----LAAVFILIVLAGISFAVLYLIYR----PEAPK 106
Query: 161 CSIVVHTVNDIKINA 117
SI +V+ I +N+
Sbjct: 107 YSIEGFSVSGINLNS 121
>At2g27080.1 68415.m03253 harpin-induced protein-related /
HIN1-related / harpin-responsive protein-related
contains 1 transmembrane domain; similar to hin1 homolog
(GI:13122296) [Arabidopsis thaliana]; similar to hin1
(GI:22830759) [Nicotiana tabacum]
Length = 260
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -2
Query: 335 HRGRAWSR--TNRKYSLCCICTF*IRHYSSAVGLLVVLQIQSSSAIFLLVRFFKVKRFPD 162
HR SR TNR CC C+F +AV +L+VL S + ++L+ R P
Sbjct: 56 HRFEQLSRKKTNRSNCRCCFCSF-----LAAVFILIVLAGISFAVLYLIYR----PEAPK 106
Query: 161 CSIVVHTVNDIKINA 117
SI +V+ I +N+
Sbjct: 107 YSIEGFSVSGINLNS 121
>At3g06150.1 68416.m00707 expressed protein
Length = 594
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +3
Query: 300 FPVRSTPSASTMVSSQPLIMAEGTASPNVTL--TPQDLIYKK 419
+ VR +PS S +S++P +++E N+TL P++L+ KK
Sbjct: 62 YSVRISPSPSPFMSTKPNLVSEKPHRQNLTLMMAPRNLVPKK 103
>At3g47330.1 68416.m05144 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 664
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 460 DRITDRTVTSDAEKIIVLLRQQTLQQYLVRECEFKAFNIRY 582
D++TD+ D+E + +R Q +++Y+ + E +A RY
Sbjct: 522 DKLTDKLAVMDSEIKRICVRVQGIEEYVADQLEKEAEKARY 562
>At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein
similar to beta-hexosaminidase precursor SP:P43077 from
[Candida albicans]
Length = 580
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = +3
Query: 231 YYQKSDCRRIMPNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDL 407
YY D R + + + + S ++ S+P + A+G+ P++ TP+D+
Sbjct: 184 YYGVDDIMRTIKAMSANKLNVFHWHITDSQSFPLVLPSEPSLAAKGSLGPDMVYTPEDV 242
>At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative
similar to mitogen-activated protein kinase [Arabidopsis
thaliana] gi|1255448|dbj|BAA09057; contains Pfam
PF00069: Protein kinase domain
Length = 773
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 269 FRRYKCNTSCISGSFYSKRVHDGLQPAFNNGRGHSVTKC 385
+RRY+ S IS Y+K++ DGL+ + G H KC
Sbjct: 591 YRRYQIRDSLIS--LYTKQILDGLKYLHHKGFIHRDIKC 627
>At5g44415.1 68418.m05439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 611
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 460 DRITDRTVTSDAEKIIVLLRQQTLQQYLVRECEFKAFNIRY 582
D++TD+ D+E + LR Q +++Y+ + E +A +Y
Sbjct: 467 DKLTDKLAVMDSEIKRICLRVQGIEEYVADQLEKEAEKDKY 507
>At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein /
carbohydrate-binding domain-containing protein similar
to GB:AAD27896 to endoxylanases gi|1255238
(Thermoanaerobacterium thermosulfurigenes), gi|1813595
(Hordeum vulgare) and others ; contains Pfam profiles
PF00331: Glycosyl hydrolase family 10, PF02018:
Carbohydrate binding domain
Length = 1063
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 248 LQKNNAEFRRYKCNTSCISGSFYSKRV 328
L + N +FR Y N + GSFY R+
Sbjct: 825 LTRYNGKFRHYDVNNEMLHGSFYRDRL 851
>At5g40670.1 68418.m04937 PQ-loop repeat family protein /
transmembrane family protein similar to SP|O60931
Cystinosin {Homo sapiens}; contains Pfam profile
PF04193: PQ loop repeat
Length = 270
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -1
Query: 549 SHQILLKCL--LPQQNNNFLCIGRHCTVGYSVGNLAL 445
S Q+ + C+ +PQ NF R TVG+S+GN+ L
Sbjct: 157 SIQVFMTCVKYIPQAKMNFT---RKSTVGWSIGNILL 190
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles PF00168:
C2 domain; contains PF02893: GRAM domain; similar to
Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length(GI:6980525); similar to Synaptotagmin III (SytIII)
(Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3
Query: 114 VRVYFDVVYRVHNN*--TIWKPFNFEEADEKKNCRR-RLDLEYYQKSDCRRIMPNSEGTN 284
VRV +V+ N T+W P N ++ KK+C L + + QK+ + + + T+
Sbjct: 908 VRVSVSLVFDAENQSLGTVWYPLNPKKKGSKKDCGEILLKICFSQKNSVLDLTSSGDQTS 967
Query: 285 ATQA 296
A+++
Sbjct: 968 ASRS 971
>At3g25180.1 68416.m03144 cytochrome P450 family protein similar to
cytochrome P450 monooxygenase GB:AAC49188 [Pisum
sativum]; contains Pfam profile: PF00067 cytochrome P450
Length = 515
Score = 27.1 bits (57), Expect = 9.3
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Frame = +3
Query: 135 VYRVHNN*TIW---KPFNFEEADEKKNCRRRLDLEYYQKSDCRRIMPNSE-GTNATQAVF 302
++++H + IW K F E E K+ + + EY RR P G V
Sbjct: 407 IWKLHRDPKIWPDPKTFKPERFMEDKSQCEKSNFEYIPFGSGRRSCPGVNLGLRVVHFVL 466
Query: 303 PVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLI 410
VS +PL MAEG + P +++
Sbjct: 467 ARLLQGFELHKVSDEPLDMAEGPGLALPKINPVEVV 502
>At3g24870.1 68416.m03119 expressed protein
Length = 1841
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +3
Query: 210 RRRLDLEYYQKSDCRRIMPNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVT 389
+R L + Q +MP+ + + +++P VS QPL M + SPN+
Sbjct: 1409 QRYLQQQQQQFPASGSMMPHVQQPQGSSVSSSSQNSPQTQPPVSPQPLSMPPVSPSPNIN 1468
Query: 390 LTPQDLIYKKCLS 428
Q K L+
Sbjct: 1469 AMAQQKPQKSQLA 1481
>At2g29310.1 68415.m03560 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 262
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 200 EKLQKTIGSGVLPKVRLQKNNAEFRRYKCNTSCISGSFYSKRVHDGLQPAFN 355
EKL +T+ S K+ + NN R K T ++ F S + L+PAF+
Sbjct: 74 EKLMQTVSSLFDGKLNILVNNVGVIRGKPTTEYVAEDF-SYHISTNLEPAFH 124
>At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type,
domain; similar to S-locus protein 4 (GI:6069478)
[Brassica rapa]; similar to Pre-mRNA cleavage complex II
protein Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo
sapiens]
Length = 416
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 285 ATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCLSELETLVMPDYRQ 464
A+ + F +R+ S +T +P + G +PN + P L Y+K L +PD+
Sbjct: 92 ASNSSFALRNNDS-NTNNYQKPFVAGYG--NPNPQIVPLPLPYRKLDDNLSLDSLPDWVP 148
Query: 465 NNR 473
N+R
Sbjct: 149 NSR 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,205,916
Number of Sequences: 28952
Number of extensions: 257047
Number of successful extensions: 717
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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