Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0063
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 51 6e-07
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 51 8e-07
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 50 1e-06
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 50 2e-06
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 49 3e-06
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 44 1e-04
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 44 1e-04
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 39 0.004
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 38 0.008
At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein con... 31 0.56
At4g08340.1 68417.m01378 Ulp1 protease family protein contains P... 30 1.3
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 29 3.0
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 29 3.0
At2g19640.2 68415.m02295 SET domain-containing protein contains ... 28 5.2
At2g19640.1 68415.m02294 SET domain-containing protein contains ... 28 5.2
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 28 6.8
At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibit... 27 9.0
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 51.2 bits (117), Expect = 6e-07
Identities = 30/100 (30%), Positives = 50/100 (50%)
Frame = +3
Query: 180 THLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDADTEE 359
THL +A + P T +V + ++ N+ I +K K P + LLS+GG +
Sbjct: 39 THLFCAFADLDPQTNSVVVSGAH---EQEFSNFTKI--VKKKNPHVQTLLSIGGR--NAD 91
Query: 360 PEKYNLLLESQQARTAFINSGVLXAEQYGFDGIDLAWQFP 479
+ + + +R +FI S + A Y FDG+DL W++P
Sbjct: 92 KSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWKYP 131
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 50.8 bits (116), Expect = 8e-07
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Frame = +3
Query: 153 DLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAIT-SLKAKYPGLTVLL 329
D+D +L THL +A ++ ++Y++ N + A T +++ + P + LL
Sbjct: 22 DIDSSLF--THLFCTFADLEAESYEITIATWN------QAPFHAFTETVQQRNPHVKTLL 73
Query: 330 SVGGDADTEEPEKYNLLLESQQARTAFINSGVLXAEQYGFDGIDLAWQFP 479
S+GG + + + + + +R +FI S + A YGF G+DL W++P
Sbjct: 74 SIGGG--NADKDAFASMASNPDSRASFIQSTITVARSYGFHGLDLDWEYP 121
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 50.0 bits (114), Expect = 1e-06
Identities = 31/110 (28%), Positives = 54/110 (49%)
Frame = +3
Query: 153 DLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLS 332
D+D +L THL +A + T ++ + N T +++ + P + LLS
Sbjct: 43 DIDSSLF--THLFCAFADLNSQTNQVTVSSANQPKFSTFTQ-----TVQRRNPSVKTLLS 95
Query: 333 VGGDADTEEPEKYNLLLESQQARTAFINSGVLXAEQYGFDGIDLAWQFPS 482
+GG + Y + + +R +FI+S + A YGF G+DL W++PS
Sbjct: 96 IGGGI--ADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPS 143
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 49.6 bits (113), Expect = 2e-06
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Frame = +3
Query: 126 ESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAK 305
E+Q + + P+ F THL +A + +++K+ + I T ++K +
Sbjct: 24 ETQDPITSAETIPSALF-THLFCAFADLDANSHKVFVSQAHEFIFSTFTE-----TVKIR 77
Query: 306 YPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLXAEQYGFDGIDLAWQFP-S 482
P + LLS+GG + + + Q+R FI+S + A GF G+DLAW++P S
Sbjct: 78 NPQVKTLLSIGGK--NANNSAFASMASNHQSRKTFIDSWIFIARSNGFHGLDLAWEYPYS 135
Query: 483 VXEHTPSVFLMTTVRVAFGYHTR 551
E T L+ +R A +R
Sbjct: 136 DHEMTDFGNLVGELRAAVEAESR 158
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/105 (28%), Positives = 51/105 (48%)
Frame = +3
Query: 171 SFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDAD 350
S THL +A I TY+++ + N T +++ + P + LLS+GGD
Sbjct: 45 SLFTHLFCAFADINTLTYQVIVSSRNKPKFSTFTQ-----TVRRRNPTVKTLLSIGGDFT 99
Query: 351 TEEPEKYNLLLESQQARTAFINSGVLXAEQYGFDGIDLAWQFPSV 485
+ + + +R FI+S + A GF G+DL W++PS+
Sbjct: 100 YNFA--FASMASNPTSRKLFISSSIKLARSCGFHGLDLNWKYPSI 142
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 44.0 bits (99), Expect = 1e-04
Identities = 34/126 (26%), Positives = 60/126 (47%)
Frame = +3
Query: 105 DSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRA 284
D +S E ++ P + F THL +A + T+++ N ++
Sbjct: 22 DGKSQSPECLSQGTPSSFIDSTLF-THLFCAFADVDSSTHEVTISAAN-----SYQFSSF 75
Query: 285 ITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLXAEQYGFDGIDL 464
++K K + LLS+GG D ++ ++ S+ R AFI+S + A + F G+DL
Sbjct: 76 TETVKEKNTDVQTLLSIGGK-DADKAVLASMASNSKN-RKAFIDSSIDIARKKDFYGLDL 133
Query: 465 AWQFPS 482
AW++PS
Sbjct: 134 AWEYPS 139
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 43.6 bits (98), Expect = 1e-04
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Frame = +3
Query: 180 THLLYGYAGIQPDTYKL-VSLNENLDIDR-THDNYRAITSLKAKYPGLTVLLSVGGDADT 353
THL +A + T+++ +S + + TH ++K K + LLS+GG D
Sbjct: 38 THLFCAFADVDSSTHEVTISAANSCQVSSFTH-------TVKDKNTDVQTLLSIGGK-DA 89
Query: 354 EEPEKYNLLLESQQARTAFINSGVLXAEQYGFDGIDLAWQFPS 482
++ ++ S+ R AFI+S + A + F G+DLAW++PS
Sbjct: 90 DKAVLASMASNSKN-RKAFIDSSIDIARKKDFYGLDLAWEYPS 131
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 378 LLESQQARTAFINSGVLXAEQYGFDGIDLAWQFP 479
+ S R +FI S + A YGFDG+DL W++P
Sbjct: 1 MASSSYGRKSFILSTISIARSYGFDGLDLDWEYP 34
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 37.5 bits (83), Expect = 0.008
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +3
Query: 378 LLESQQARTAFINSGVLXAEQYGFDGIDLAWQFPS 482
++ ++ +R +FI+S + A GF G+DLAW++P+
Sbjct: 79 IVSNRTSRESFISSSISIARSLGFYGLDLAWEYPN 113
>At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:3820531) [Pinus
contorta]; similar to beta-glucosidase GI:804655 from
(Hordeum vulgare)
Length = 520
Score = 31.5 bits (68), Expect = 0.56
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Frame = +3
Query: 195 GYAGIQPDTYKLVSLNENLDIDRTHDN----YRAITSLKAKYPGLTVLLSVGGDADTEEP 362
GYA ++ D V++ E D++ H + ++ + LK +YP + + ++ G D ++P
Sbjct: 368 GYA-LKLDRKGNVTIGELTDVNWQHIDPTGFHKMLNYLKDRYPNMPMFITENGFGDLQKP 426
Query: 363 EKYNLLLESQQARTAFINSGVLXAEQYGF-DGIDLAWQF 476
E + L + R ++ SG L A Q DG ++ F
Sbjct: 427 ETTDKELLNDTKRIQYM-SGYLEALQAAMRDGANVKGYF 464
>At4g08340.1 68417.m01378 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 988
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +3
Query: 309 PGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLXAEQYGFDGIDLAWQFPSVX 488
P V V DAD + PE N A + + V A G G+D+ +FP +
Sbjct: 581 PNRVVADVVNVDADKDTPEDANTDFVVDDIPPAVVCNEVAPATDDGMVGVDVTAEFPDIL 640
Query: 489 EH 494
E+
Sbjct: 641 EY 642
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 186 LLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITS 293
LLYGY+G+ +KL L+ +RT ++ A+ S
Sbjct: 130 LLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLS 165
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 300 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 428
AK G +L +GG ++TE EK + + ++ A A + G++
Sbjct: 401 AKLSGGVAVLKIGGASETEVSEKKDRVTDALNATKAAVEEGIV 443
>At2g19640.2 68415.m02295 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 398
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 472 CQARSIPSX--PYCSAXSTPELMKAVRACCDSSRRLYFSGSSVSASPPTD 329
CQ+ S+ S P C A TP L C+S RRL+ S SS + P+D
Sbjct: 75 CQSCSLVSFCSPNCFASHTPWL-------CESLRRLHQSSSSAFSDQPSD 117
>At2g19640.1 68415.m02294 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 341
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 472 CQARSIPSX--PYCSAXSTPELMKAVRACCDSSRRLYFSGSSVSASPPTD 329
CQ+ S+ S P C A TP L C+S RRL+ S SS + P+D
Sbjct: 75 CQSCSLVSFCSPNCFASHTPWL-------CESLRRLHQSSSSAFSDQPSD 117
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 300 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 428
AK G +L +GG ++ E EK + + ++ A A + G+L
Sbjct: 400 AKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIL 442
>At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibitor
family protein similar to extensin-like protein [Zea
mays] GI:5917666
Length = 264
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/70 (21%), Positives = 30/70 (42%)
Frame = -1
Query: 535 NATLTVVIRKTEGVCSXTLGNCQARSIPSXPYCSAXSTPELMKAVRACCDSSRRLYFSGS 356
N T +++ T + + ++RS P+ + PE+MK + + +S +Y
Sbjct: 4 NKTYRIIVIFTVSILVTISTHVESRS--DSPFSTPAPAPEVMKPIASPANSPAEIYTDSP 61
Query: 355 SVSASPPTDN 326
S P D+
Sbjct: 62 VASPEAPADS 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,542,232
Number of Sequences: 28952
Number of extensions: 291869
Number of successful extensions: 804
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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