Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0036
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 172 2e-43
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 172 2e-43
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 170 6e-43
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 163 1e-40
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 163 1e-40
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 1.1
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 1.1
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 2.5
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 5.8
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 27 7.7
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 172 bits (418), Expect = 2e-43
Identities = 87/176 (49%), Positives = 126/176 (71%), Gaps = 2/176 (1%)
Frame = +2
Query: 5 IIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPM 178
I K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 8 IHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPF 67
Query: 179 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 358
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV+
Sbjct: 68 RLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVH 123
Query: 359 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKXDTXQXXYKKLTG 526
+A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K +T Y+KLTG
Sbjct: 124 EAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTG 179
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 172 bits (418), Expect = 2e-43
Identities = 87/176 (49%), Positives = 126/176 (71%), Gaps = 2/176 (1%)
Frame = +2
Query: 5 IIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPM 178
I K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 8 IHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPF 67
Query: 179 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 358
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV+
Sbjct: 68 RLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVH 123
Query: 359 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKXDTXQXXYKKLTG 526
+A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K +T Y+KLTG
Sbjct: 124 EAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTG 179
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 170 bits (414), Expect = 6e-43
Identities = 89/176 (50%), Positives = 124/176 (70%), Gaps = 2/176 (1%)
Frame = +2
Query: 5 IIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPM 178
I K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 8 IKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPF 67
Query: 179 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 358
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV+
Sbjct: 68 RLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVH 123
Query: 359 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKXDTXQXXYKKLTG 526
+A+LED+ FPAEIVGKR R +LDGS+++KV LD ++ E+K +T Y+KLTG
Sbjct: 124 EAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTG 179
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 163 bits (395), Expect = 1e-40
Identities = 82/176 (46%), Positives = 122/176 (69%), Gaps = 2/176 (1%)
Frame = +2
Query: 5 IIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPM 178
I K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 8 IHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPY 67
Query: 179 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 358
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV+
Sbjct: 68 RLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVH 123
Query: 359 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKXDTXQXXYKKLTG 526
+AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+K + YKKLTG
Sbjct: 124 EAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTG 179
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 163 bits (395), Expect = 1e-40
Identities = 82/176 (46%), Positives = 122/176 (69%), Gaps = 2/176 (1%)
Frame = +2
Query: 5 IIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPM 178
I K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 8 IHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPY 67
Query: 179 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 358
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV+
Sbjct: 68 RLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVH 123
Query: 359 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKXDTXQXXYKKLTG 526
+AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+K + YKKLTG
Sbjct: 124 EAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTG 179
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 316 QTKEATLKDIDLCVRCYPRGLG 381
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 316 QTKEATLKDIDLCVRCYPRGLG 381
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 435 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 334
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +2
Query: 137 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 286
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.5 bits (58), Expect = 7.7
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Frame = +2
Query: 188 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 367
K Q+I+ L L S + + +L SHK R++ ++KR T D I
Sbjct: 7 KLKQRIRQDLAESLSVSVSETNPQSQSLKLLLDSSSHKPRLSKREKRRNCETFAREDDEI 66
Query: 368 LEDLV---FPAEIVGKRIRVKLDGSQLIKV-HLDKNQQTTIEHKXDTXQXXYKK 517
E+ V +E +I+ K ++V L+ ++ T E K + KK
Sbjct: 67 RENEVGNGGSSEKTDTKIKKKRKRDDAVEVDELEGDEGTKEEQKPQKKKNKKKK 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,412,291
Number of Sequences: 28952
Number of extensions: 217958
Number of successful extensions: 624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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