Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0100
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75030.1 68414.m08715 pathogenesis-related thaumatin family p...    30   1.6  
At5g13950.1 68418.m01631 expressed protein                             27   8.5  
At5g01010.1 68418.m00001 expressed protein                             27   8.5  
At3g12540.1 68416.m01560 expressed protein contains Pfam profile...    27   8.5  

>At1g75030.1 68414.m08715 pathogenesis-related thaumatin family
           protein identical to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile: PF00314
           Thaumatin family
          Length = 246

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -3

Query: 385 SDKFLSFYRMSVASFIKVLLDVRPYITFMDTKFRKCISHFKE--PPRLHIVRVRPTSYMD 212
           S+  + FY +S+     V + ++P   F + K+  C+S   E  P  L I+     S   
Sbjct: 118 SNAGMDFYDVSLVDGYNVKMGIKPQGGFGNCKYAGCVSDINEICPSELRIMDPNSGSVAA 177

Query: 211 YKFYCGFFSA 182
            K  C  FS+
Sbjct: 178 CKSACAAFSS 187


>At5g13950.1 68418.m01631 expressed protein 
          Length = 939

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 328 LDVRPYITFMDTKFRKCISHFKEPPRLHIVRVRPTSYMDYK 206
           LDV+PY  F++ + +K  +H+     LH+V+  P +Y  +K
Sbjct: 348 LDVQPYGVFVEEEQKKLNAHW-----LHLVKDLPAAYAIWK 383


>At5g01010.1 68418.m00001 expressed protein
          Length = 409

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 501 LVPLSNTY-CSFEIHLQNVKIAVEFAVNNCSVCVLNGFAXIAVNRSREKTVVRP 659
           +V    TY  S  +  +N  IA +F++    + +  GF+   +N S EKT++ P
Sbjct: 309 IVQAGRTYEISLMVESENSYIAWDFSLMQGKISMDIGFSVEYINASGEKTLILP 362


>At3g12540.1 68416.m01560 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 503

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 534 EIHLQNVKIAVEFAVNNCSVCVLNGFAXIAVNRSREK 644
           ++   N K  + F +N  + CV+NGF    +  S+EK
Sbjct: 290 DLSFLNHKKKMAFWINTYNACVMNGFLEHGLPSSKEK 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,720,631
Number of Sequences: 28952
Number of extensions: 241184
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)