Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a01
         (466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ...    28   2.7  
At4g12840.1 68417.m02012 expressed protein contains Pfam profile...    28   3.6  
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea...    27   4.7  
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea...    27   4.7  

>At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 600

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 118 LSFIVEVLYIKFLIQI--LYTFYHFHFNEV 35
           + F+VEVLY+ F+ QI  L T Y   F E+
Sbjct: 163 VDFMVEVLYLSFVFQIQELVTLYERQFLEI 192


>At4g12840.1 68417.m02012 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 413

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 136 HFYFTLLSFIVEVLYIKFLIQILYT-FYHFHFNEVTLLML 20
           + + TLL  +  V Y + L Q++ T FY    + +T+LML
Sbjct: 172 NMFVTLLGGLQSVFYTRILSQLILTFFYGMKISVLTILML 211


>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1309

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 89  NVQHLNNETKQREIEMGQIEKSRSS 163
           N+Q +NN+ +  E+E+ +I ++RS+
Sbjct: 740 NIQDVNNDPRDTEVEVKEISEARST 764


>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1344

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 89  NVQHLNNETKQREIEMGQIEKSRSS 163
           N+Q +NN+ +  E+E+ +I ++RS+
Sbjct: 775 NIQDVNNDPRDTEVEVKEISEARST 799


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,684,732
Number of Sequences: 28952
Number of extensions: 130252
Number of successful extensions: 272
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)