Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e01
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13330.1 68414.m01547 expressed protein similar to nuclear re... 30 1.2
At5g16300.1 68418.m01905 expressed protein 25 1.5
At5g16300.2 68418.m01906 expressed protein 25 1.5
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 3.8
At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR... 29 3.8
At4g25350.1 68417.m03648 EXS family protein / ERD1/XPR1/SYG1 fam... 28 5.0
At1g61320.1 68414.m06911 hypothetical protein 28 5.0
At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containi... 28 5.0
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 28 6.6
At4g30640.1 68417.m04345 F-box family protein (FBL19) contains s... 27 8.7
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 27 8.7
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim... 27 8.7
>At1g13330.1 68414.m01547 expressed protein similar to nuclear
receptor coactivator GT198 (GI:16506273) {Rattus
norvegicus}; similar to TBP-1 interacting protein
(GI:7328534) [Homo sapiens]
Length = 226
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +3
Query: 81 EHKMHKIKFELPDNSGESTKYLITLLIKEIHPSIGEIRKKLQVKHIEEQELIKIREVIAL 260
+ ++ + K + D E L ++EI ++RK +VK +EE+ L+K+RE I L
Sbjct: 92 QEQLQEKKKTISDVESEIKSLQSNLTLEEIQEKDAKLRK--EVKEMEEK-LVKLREGITL 148
Query: 261 CCNQIKKCVVNL 296
+ KK V ++
Sbjct: 149 VRPEDKKAVEDM 160
>At5g16300.1 68418.m01905 expressed protein
Length = 1068
Score = 24.6 bits (51), Expect(2) = 1.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 259 SAITSRILINSCSSMCLTCNFFRISPILGCISLIKSVIKYFVDSPE 122
S+I I S SS+ T ++P+ + I +KY VD+PE
Sbjct: 91 SSIHGNIRSLSSSSVAETPKLASLNPVRVNVYGIACRVKYLVDTPE 136
Score = 23.8 bits (49), Expect(2) = 1.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 481 KYIVVTLIESSVLSLDKLLFLFSRCWSIVFNLSMHHSNL 365
+ +V T + S D ++ + S C SI N+S H N+
Sbjct: 59 RQLVGTRYRDLIDSADSIVHMKSLCESISANISSIHGNI 97
>At5g16300.2 68418.m01906 expressed protein
Length = 1034
Score = 24.6 bits (51), Expect(2) = 1.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 259 SAITSRILINSCSSMCLTCNFFRISPILGCISLIKSVIKYFVDSPE 122
S+I I S SS+ T ++P+ + I +KY VD+PE
Sbjct: 91 SSIHGNIRSLSSSSVAETPKLASLNPVRVNVYGIACRVKYLVDTPE 136
Score = 23.8 bits (49), Expect(2) = 1.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 481 KYIVVTLIESSVLSLDKLLFLFSRCWSIVFNLSMHHSNL 365
+ +V T + S D ++ + S C SI N+S H N+
Sbjct: 59 RQLVGTRYRDLIDSADSIVHMKSLCESISANISSIHGNI 97
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 513 LSKLSEVVYKNDYKENFGMCELWKSELLQILSDLHLAIDELLLSAM 650
++KL VY DY+ N G+ L K+EL ++ ++DE L+ M
Sbjct: 66 IAKLESEVY--DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHM 109
>At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1304
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 261 CCNQIKKCVVNLLGIF-KLEYNQGIFLQESR 350
C N+IK+C V LL ++ + EYNQ E R
Sbjct: 1201 CSNRIKECGVRLLYVYQETEYNQQTTRSEKR 1231
>At4g25350.1 68417.m03648 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 745
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 143 ILCRFSRVIRKLKFYFMHFMFIVFLIPFY 57
+LC F+ + R +F+F+ +F PFY
Sbjct: 478 VLCPFNILYRSSRFFFLSVLFRCIAAPFY 506
>At1g61320.1 68414.m06911 hypothetical protein
Length = 459
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 87 KMHKIKFELPDNSGESTKYLITLLIKEIHPSIGEIRKKL-QVKHIEEQELIKIR 245
K+ KFE+PD+S + K L TL + + I H+E ELI+ R
Sbjct: 153 KLRWCKFEIPDSSPKGLKLLKTLSLMRTQVMVKTIDAIFNNCIHLESLELIECR 206
>At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 738
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 504 FEVLSKLSEVVYKNDYKENFGMCELWKSELLQILSDLHLAIDELLLS 644
F+V S LS Y+ D+ E + E WKSE + + D+ + DEL +S
Sbjct: 693 FQVYSLLSR--YRGDFSEFRSVFEKWKSEFTENV-DVSDSDDELFVS 736
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 27.9 bits (59), Expect = 6.6
Identities = 8/38 (21%), Positives = 20/38 (52%)
Frame = -1
Query: 262 HSAITSRILINSCSSMCLTCNFFRISPILGCISLIKSV 149
+ S ++N C+S+ + + ++ + G + +KSV
Sbjct: 546 YDVANSEFMVNECNSLSIWVRLYEVTGVFGFVHYVKSV 583
>At4g30640.1 68417.m04345 F-box family protein (FBL19) contains
similarity to SKP1 interacting partner 1 GI:10716947
from [Arabidopsis thaliana]
Length = 301
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -1
Query: 307 NIPRRFTTHFFI*LQHSAIT-SRILINSCSSMCLTCNFFRISPILGCISLIKSVI 146
NI R + L+H I S + S+C C+ + GCISL +S I
Sbjct: 211 NIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGCISLTRSDI 265
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 93 HKIKFELPDNSGESTKYLITLLIKEIH----PSIGEIRKKLQVKHIE 221
++ +FELPDN G+S +I + H S+G++R ++ +E
Sbjct: 231 NRFRFELPDNLGDSPVSVIVVANNHFHGCIPTSLGDMRNLEEIIFME 277
>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein
similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
{Clostridium acetobutylicum}; contains Pfam profiles
PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
DNA gyrase C-terminal domain beta-propeller
Length = 950
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 450 LYCH*TNYCFFFQDVGLLYLICLCTIPISLRDIGGFP 340
L CH ++ FF D G++Y IP R+ G P
Sbjct: 644 LVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTP 680
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,505,650
Number of Sequences: 28952
Number of extensions: 238523
Number of successful extensions: 629
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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