Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c20
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53330.1 68418.m06628 expressed protein                             28   4.5  
At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)          27   7.9  
At2g35670.1 68415.m04375 transcription factor, putative / fertil...    27   7.9  
At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative / (R...    27   7.9  

>At5g53330.1 68418.m06628 expressed protein
          Length = 221

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 179 RNRQGGGTYPRGLTRGPTTSSKTSS 105
           RN+ GG +YPR +   P+TS   SS
Sbjct: 6   RNKSGGPSYPRPMYGPPSTSPSPSS 30


>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
          Length = 92

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 164 HPAYFCREAVMRFGLKGEAAVVTKLETLELLKVGGAFTL 280
           H  YFC E   ++G+K +A  +   +    +K GGA+T+
Sbjct: 34  HSKYFC-EFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTM 71


>At2g35670.1 68415.m04375 transcription factor, putative /
           fertilization-independent seed 2 protein (FIS2)
           identical to GB:AF096095
          Length = 632

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = -2

Query: 279 NVNAPPTLRSSKVSS--LVTT---AASPFKPKRITASRQK 175
           N+ +PP  RSSK +S  L TT    A P +PK    SR+K
Sbjct: 426 NIPSPPKTRSSKKTSNILATTQPAKAEPSEPKVTRVSRRK 465


>At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative /
           (R)-oxynitrilase, putative similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|52707];
           contains Pfam protile PF00732 GMC oxidoreductase
          Length = 552

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +2

Query: 170 AYFCREAVMRFGLKGEAAVVTKLETLELLKVGGAFTLRMSMGSSNHLTPG 319
           A FCR  V         AVV K+   +L KV G  +LR+  GS+ +++PG
Sbjct: 480 ADFCRRTVSTIWHYHGGAVVGKVVDSDL-KVIGVNSLRLVDGSTFNISPG 528


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,825,734
Number of Sequences: 28952
Number of extensions: 214654
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)