Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c19
         (379 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    27   3.1  
At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase / x...    27   4.1  
At1g35850.1 68414.m04454 pumilio/Puf RNA-binding domain-containi...    26   7.2  

>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
            putative 
          Length = 2172

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 352  YSIPPRLRPIMYCIHRHGANKLIYQTKI 269
            ++ PP +RP+   IH HG + L ++ ++
Sbjct: 1538 FNFPPNVRPVPLEIHIHGVDILSFEARM 1565


>At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase /
           xyloglucan endotransglycosylase / endo-xyloglucan
           transferase (XTR9) identical to xyloglucan
           endotransglycosylase GI:4218963 from [Arabidopsis
           thaliana]
          Length = 287

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -3

Query: 110 HTNALLGWSSDSNLEFPVLWITET-DIHTY 24
           HTN   G   D  ++F  LW   T D HTY
Sbjct: 121 HTNVFTGGKGDREMQFR-LWFDPTADFHTY 149


>At1g35850.1 68414.m04454 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806: Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain)
          Length = 304

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 355 FYSIPPRLRPIMYCIHRHGANKLI 284
           FYS+  +LRP  + +HR   +K++
Sbjct: 271 FYSLVNKLRPYRFLLHRFPESKIV 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,043,509
Number of Sequences: 28952
Number of extensions: 149075
Number of successful extensions: 271
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)