Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c15
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17830.1 68418.m02090 hypothetical protein contains Pfam doma...    31   0.47 
At5g07080.1 68418.m00802 transferase family protein similar to 1...    28   5.8  

>At5g17830.1 68418.m02090 hypothetical protein contains Pfam domain,
           PF04515: Protein of unknown function, DUF580
          Length = 474

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +2

Query: 218 TVHLRNKKLLAATAAGNGIGIDTVDSGHR-GFVNRGHHDHGLRCRTA*ETCSPYETLP 388
           T+   N+ + A+T   N I    +  G+R GFV+ G H+ GLR + + +T   + T+P
Sbjct: 299 TIRCCNRDIYASTPGCNWIANHIILGGNRYGFVHVGAHNKGLR-QASSDTWRRFRTIP 355


>At5g07080.1 68418.m00802 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase - Taxus
           cuspidata, AF193765, EMBL:AF193765; contains Pfam
           transferase family domain PF00248
          Length = 450

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 305 GFVNRGHHDHGLRCRTA*ETCSPYETLPILR 397
           G ++RG HDH L  R     CSP E +P +R
Sbjct: 86  GKLHRGSHDHRLELR-----CSPAEGVPFVR 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,533,048
Number of Sequences: 28952
Number of extensions: 250998
Number of successful extensions: 678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)