Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10c08
(607 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 52 3e-07
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 52 4e-07
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 37 0.012
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 36 0.021
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 30 1.0
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 30 1.4
At2g27350.5 68415.m03295 OTU-like cysteine protease family prote... 30 1.4
At2g27350.4 68415.m03294 OTU-like cysteine protease family prote... 30 1.4
At2g27350.3 68415.m03293 OTU-like cysteine protease family prote... 30 1.4
At2g27350.2 68415.m03292 OTU-like cysteine protease family prote... 30 1.4
At2g27350.1 68415.m03291 OTU-like cysteine protease family prote... 30 1.4
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 28 4.2
At3g28790.1 68416.m03593 expressed protein 27 7.3
At2g17787.1 68415.m02061 expressed protein 27 7.3
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 27 7.3
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 27 7.3
At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 9.6
At3g22070.1 68416.m02785 proline-rich family protein contains pr... 27 9.6
At1g23540.1 68414.m02960 protein kinase family protein contains ... 27 9.6
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 52.0 bits (119), Expect = 3e-07
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 20/96 (20%)
Frame = +2
Query: 380 LHPLVIMNVSEHWTRLKAQEGFPQT--------------------VVGALIGKQKGRNIE 499
LHPLV++N+S+H+TR+K Q P V G +IG Q+GR +E
Sbjct: 13 LHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYGCVIGLQRGRTVE 72
Query: 500 VMNSFELVFSMXXXXXXXXXXYYNMKEEQFKQVFSD 607
+ NSFEL+F + K+E +K+VF D
Sbjct: 73 IFNSFELIFD--PALDTLDRSFLEKKQELYKKVFPD 106
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 51.6 bits (118), Expect = 4e-07
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 20/96 (20%)
Frame = +2
Query: 380 LHPLVIMNVSEHWTRLKAQEGFPQT--------------------VVGALIGKQKGRNIE 499
LHPLVI+N+S+H+TR+K Q P + V G +IG Q+GR +E
Sbjct: 13 LHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYGCVIGVQRGRTVE 72
Query: 500 VMNSFELVFSMXXXXXXXXXXYYNMKEEQFKQVFSD 607
+ NSFEL++ + K+E +K+VF D
Sbjct: 73 IFNSFELLYD--PSTQTLDRSFLEKKQELYKKVFPD 106
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 36.7 bits (81), Expect = 0.012
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +2
Query: 380 LHPLVIMNVSEHWTRLKAQEGFPQTVVGALIGKQKGRNIEVMNSFELVFSMXXXXXXXXX 559
+HPLV++++ +H+ R+ + VVG L+G ++V NS+ + F
Sbjct: 19 VHPLVLLSIVDHYNRVAKDTS--KRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWF 76
Query: 560 XYYNMKEEQF 589
+N E F
Sbjct: 77 LDHNYHESMF 86
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 35.9 bits (79), Expect = 0.021
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +2
Query: 380 LHPLVIMNVSEHWTRLKAQEGFPQTVVGALIGKQKGRNIEVMNSFELVFSMXXXXXXXXX 559
+HPLV++++ +H+ R+ + VVG L+G ++V NS+ + F
Sbjct: 19 VHPLVLLSIVDHYNRVAKDSS--KRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76
Query: 560 XYYNMKEEQF 589
+N E F
Sbjct: 77 LDHNYHESMF 86
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 200 PRVKMSSADRIDFEMEVEVESASSGPPIEVP--NPTSPAPTTPGSN 331
P K S A D E EVE SS P +E P + +P+ + P SN
Sbjct: 871 PVFKSSPAPSPDSEPEVEAPVPSSEPEVEAPKQSEATPSSSPPSSN 916
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 260 SASSGPPIEVPNPTSPAPTTPGS 328
S S PPI VP+P S PT+PGS
Sbjct: 524 SISPSPPITVPSPPS-TPTSPGS 545
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 275 PPIEVPNPTSPAPTTP 322
PPI P P+SP P+TP
Sbjct: 606 PPIVGPTPSSPPPSTP 621
>At2g27350.5 68415.m03295 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 388
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 221 ADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSNK 334
++ ID + V S S PP+ P P + PGSN+
Sbjct: 97 SEGIDCDSPVSGGSNSDSPPVPAPPPKPSSTVNPGSNR 134
>At2g27350.4 68415.m03294 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 388
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 221 ADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSNK 334
++ ID + V S S PP+ P P + PGSN+
Sbjct: 97 SEGIDCDSPVSGGSNSDSPPVPAPPPKPSSTVNPGSNR 134
>At2g27350.3 68415.m03293 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 506
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 221 ADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSNK 334
++ ID + V S S PP+ P P + PGSN+
Sbjct: 97 SEGIDCDSPVSGGSNSDSPPVPAPPPKPSSTVNPGSNR 134
>At2g27350.2 68415.m03292 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 221 ADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSNK 334
++ ID + V S S PP+ P P + PGSN+
Sbjct: 97 SEGIDCDSPVSGGSNSDSPPVPAPPPKPSSTVNPGSNR 134
>At2g27350.1 68415.m03291 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 221 ADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSNK 334
++ ID + V S S PP+ P P + PGSN+
Sbjct: 97 SEGIDCDSPVSGGSNSDSPPVPAPPPKPSSTVNPGSNR 134
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 266 SSGPPIEVPNPTSPAPTTPGSN 331
+S PP P P PAP TP SN
Sbjct: 724 TSSPPPPPPPPPPPAPPTPQSN 745
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 269 SGPPIEVPNPTSPAPTTPGSNK 334
S P P P++PAP+TP + K
Sbjct: 299 STPTPSTPTPSTPAPSTPAAGK 320
>At2g17787.1 68415.m02061 expressed protein
Length = 324
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 218 SADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSNK 334
S D E ++ S SS P+E PTS TPG +K
Sbjct: 201 SKDNRKVSKEKKMPSLSSCNPLEQEKPTSSHQETPGPSK 239
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 263 ASSGPPIEVPNPTSPAPTTP 322
A+ PP+ P P SP P TP
Sbjct: 68 ANPPPPVSSPPPASPPPATP 87
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 263 ASSGPPIEVPNPTSPAPTTP 322
A+ PP+ P P SP P TP
Sbjct: 68 ANPPPPVSSPPPASPPPATP 87
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 275 PPIEVPNPTSPAPTTP 322
PP E P+P P+P+TP
Sbjct: 148 PPGETPSPPKPSPSTP 163
>At3g22070.1 68416.m02785 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 178
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 260 SASSGPPIEVPNPTSPAPTTP 322
S S PP + NP P P+TP
Sbjct: 96 SISPNPPAPIVNPNPPPPSTP 116
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 257 ESASSGPPIEVPNPTSPAPTTPGSN 331
ES SS PP P T+P P TP N
Sbjct: 6 ESPSSSPPAP-PADTAPPPETPSEN 29
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,858,913
Number of Sequences: 28952
Number of extensions: 198626
Number of successful extensions: 688
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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