Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c04
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09970.1 68414.m01123 leucine-rich repeat transmembrane prote...    29   1.9  
At1g09970.2 68414.m01124 leucine-rich repeat transmembrane prote...    29   3.4  
At5g49660.1 68418.m06147 leucine-rich repeat transmembrane prote...    28   4.5  
At4g21390.1 68417.m03090 S-locus lectin protein kinase family pr...    27   7.8  
At3g29030.1 68416.m03627 expansin, putative (EXP5) identical to ...    27   7.8  

>At1g09970.1 68414.m01123 leucine-rich repeat transmembrane protein
            kinase, putative Similar to A. thaliana receptor-like
            protein kinase (gb|RLK5_ARATH). ESTs
            gb|ATTS0475,gb|ATTS4362 come from this gene isoform
            contains a TG acceptor site at intron.
          Length = 976

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +1

Query: 205  VVTQIAYITEFTLKCDNTLPENYGLYAEVDGKSLTAARIGENKYQISWTEEPAKARSGVH 384
            +  +  Y ++ T KCD        L   V GK    A  GE+K  ++W     K++  V 
Sbjct: 850  IAPEYGYASKVTEKCD-VYSFGVVLMELVTGKKPIEAEFGESKDIVNWVSNNLKSKESVM 908

Query: 385  QI 390
            +I
Sbjct: 909  EI 910


>At1g09970.2 68414.m01124 leucine-rich repeat transmembrane protein
            kinase, putative Similar to A. thaliana receptor-like
            protein kinase (gb|RLK5_ARATH). ESTs
            gb|ATTS0475,gb|ATTS4362 come from this gene isoform
            contains a TG acceptor site at intron.
          Length = 977

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 214  QIAYITEFTLKCDNTLPENYGLYAEVDGKSLTAARIGENKYQISWTEEPAKARSGVHQI 390
            +  Y ++ T KCD        L   V GK    A  GE+K  ++W     K++  V +I
Sbjct: 854  EYGYASKVTEKCD-VYSFGVVLMELVTGKKPIEAEFGESKDIVNWVSNNLKSKESVMEI 911


>At5g49660.1 68418.m06147 leucine-rich repeat transmembrane protein
            kinase, putative contains leucine rich repeat (LRR)
            domains, Pfam:PF00560; contains protein kinase domain,
            Pfam:PF00069
          Length = 966

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 214  QIAYITEFTLKCDNTLPENYGLYAEVDGKSLTAARIGENKYQISWTEEPAKARSGVHQIN 393
            + AY ++ T+KCD        L   + GK    +  GENK  ++W       + G+  I 
Sbjct: 835  EYAYSSKATIKCD-VYSFGVVLMELITGKKPVDSCFGENKNIVNWVSTKIDTKEGL--IE 891

Query: 394  ILDE 405
             LD+
Sbjct: 892  TLDK 895


>At4g21390.1 68417.m03090 S-locus lectin protein kinase family
           protein contains Pfam profiles: PF00954 S-locus
           glycoprotein family, PF00069 protein kinase domain,
           PF01453 lectin (probable mannose binding)
          Length = 849

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 126 SDCDNINKTFCDHFVICDLKGKS 58
           S+CD  N+  C  F ICD+KG +
Sbjct: 297 SECDQYNR--CGKFGICDMKGSN 317


>At3g29030.1 68416.m03627 expansin, putative (EXP5) identical to
           expansin At-EXP5 GB:AAB38071 from [Arabidopsis
           thaliana]; alpha-expansin gene family, PMID:11641069
          Length = 255

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 487 HPGSYSGPWVNSEILATF 540
           HPG + GPW+N+   ATF
Sbjct: 30  HPGGHMGPWINAH--ATF 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,975,324
Number of Sequences: 28952
Number of extensions: 229281
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)