Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b23
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q...    29   2.3  
At5g07540.2 68418.m00864 glycine-rich protein (GRP16) oleosin; g...    28   4.1  
At5g07540.1 68418.m00863 glycine-rich protein (GRP16) oleosin; g...    28   4.1  
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ...    28   5.4  
At1g75240.1 68414.m08741 zinc finger homeobox family protein / Z...    28   5.4  
At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel...    27   7.1  
At2g14820.1 68415.m01679 phototropic-responsive NPH3 family prot...    27   9.4  

>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
           SP|Q38858 Calreticulin 2 precursor {Arabidopsis
           thaliana}
          Length = 424

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 258 SDQPSNENNNAGGKGSDSSNAVEPSSDQLAMESAERDAPSH 380
           SD      ++ GG  SDS +  E +    + E++E+DA +H
Sbjct: 381 SDAEDEPEDDEGGDDSDSESKAEETKSVDSEETSEKDATAH 421


>At5g07540.2 68418.m00864 glycine-rich protein (GRP16) oleosin;
           glycine-rich protein 16 (GRP16) PMID:11431566
          Length = 190

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 252 TLSDQPSNENNNAGGKGSDSSNAVEPSSDQLAMESAERDAPSHAYNG 392
           T +DQP      +G K  + S A  PS D+    S   D P  A  G
Sbjct: 104 TKADQPGASGGASGDKPGEMSGAGGPSGDKPGGASGGGDKPGGASGG 150


>At5g07540.1 68418.m00863 glycine-rich protein (GRP16) oleosin;
           glycine-rich protein 16 (GRP16) PMID:11431566
          Length = 244

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 252 TLSDQPSNENNNAGGKGSDSSNAVEPSSDQLAMESAERDAPSHAYNG 392
           T +DQP      +G K  + S A  PS D+    S   D P  A  G
Sbjct: 104 TKADQPGASGGASGDKPGEMSGAGGPSGDKPGGASGGGDKPGGASGG 150


>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
           mays]; contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 721

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 246 SGTLSDQPSNENNNAGGKGSDSSNAVEPSSDQ 341
           +G  ++   N NNN    G+D++NA   S DQ
Sbjct: 12  NGDNNNDNENNNNNNNNGGTDNTNAGNDSGDQ 43


>At1g75240.1 68414.m08741 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 309

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 456 HPLSIARIPNHHPMHTKQYALGPP 527
           +PL +   PN+ P+H  +Y + PP
Sbjct: 164 NPLMLPPPPNYQPIHHHKYGMSPP 187


>At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel,
           putative (CNGC8) similar to cyclic nucleotide and
           calmodulin-regulated ion channel GI:4581207 from
           (Arabidopsis thaliana)
          Length = 728

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 47  VVSHLLFRSIDSYYWELNICN*V--CINLRDKNAITKTLRRTFIKTIEAVQNAAKKRSHY 220
           V+S +L  S+D  ++ L I +    CI +  K A+T T  RT I      + A + R+ Y
Sbjct: 88  VISCILAVSVDPLFFYLPIVDNSKNCIGIDSKLAVTTTTLRTIIDVFYLTRMALQFRTAY 147


>At2g14820.1 68415.m01679 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 634

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 276 ENNNAGGKGSDSSNAVEPSSDQLAMESAERDAPS 377
           +NN  GG GSDSS ++   S   A E+A+   PS
Sbjct: 593 KNNGGGGGGSDSSESL--GSMNAAEETAKTATPS 624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,751
Number of Sequences: 28952
Number of extensions: 188700
Number of successful extensions: 653
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)