Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b20
         (366 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48310.1 68414.m05396 SNF2 domain-containing protein / helica...    28   2.2  
At5g57780.1 68418.m07223 expressed protein similar to unknown pr...    27   3.8  
At5g03140.1 68418.m00262 lectin protein kinase family protein co...    27   3.8  
At5g65620.1 68418.m08255 peptidase M3 family protein / thimet ol...    27   5.0  
At1g70300.1 68414.m08088 potassium transporter, putative similar...    27   5.0  
At4g38640.1 68417.m05469 choline transporter-related contains we...    26   6.7  

>At1g48310.1 68414.m05396 SNF2 domain-containing protein / helicase
           domain-containing protein contains similarity to
           DNA-dependent ATPase A GI:6651385 from [Bos taurus]};
           contains PFam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2
          Length = 673

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 92  LKPKALTEVLSQANTGGVENTLLLNHQGALLAYSGYNDKDARVTAAIASNVWSAYEK 262
           L PK  T+  S+     V   +LL+  G L A   YN         I   +W+A E+
Sbjct: 55  LAPKPNTDAGSKPQEQKVSVKILLHSSGVLAAKFPYNQVVVDAVRKIPKAIWNAKER 111


>At5g57780.1 68418.m07223 expressed protein similar to unknown
           protein (emb CAB79759.1)
          Length = 167

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 198 TMIRMLESLLQSLVMSGQLMKNTAEMFLKKMDYI*Y 305
           T +R    LL+SLV  G+L+ +   +  + +DYI Y
Sbjct: 104 TWVRKRTDLLKSLVPGGELIDDKDYLIRETLDYIVY 139


>At5g03140.1 68418.m00262 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 711

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -1

Query: 159 NKVFSTPPVLA*LKTSVNAFGFSILKAWCCWIYMKMAKYEVKLESFSS 16
           NK+    P       +  AF  ++      W+Y K  KY  K ES +S
Sbjct: 306 NKLCKKSPAAVAGVVTAGAFFLALFAGVIIWVYSKKIKYTRKSESLAS 353


>At5g65620.1 68418.m08255 peptidase M3 family protein / thimet
           oligopeptidase family protein similar to SP|P27237
           Oligopeptidase A (EC 3.4.24.70) {Salmonella
           typhimurium}; contains Pfam profile PF01432: Peptidase
           family M3
          Length = 791

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +2

Query: 56  FM*IQQHQAFKMLKPKALTEVLSQANTGGVENTLLLN-------HQGALLAYSGYNDKDA 214
           ++ + QH   + L+ +     LS+A++G ++NT +++        +  LL Y+ Y +   
Sbjct: 320 YLPVMQHAKNRALREEVYRAYLSRASSGDLDNTAIIDQILKLRLEKAKLLGYNNYAEVSM 379

Query: 215 RVTAAIASNVWSAYEK 262
            +  A         EK
Sbjct: 380 AMKMATVEKAAELLEK 395


>At1g70300.1 68414.m08088 potassium transporter, putative similar to
           potassium transporter HAK2p [Mesembryanthemum
           crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
           Transporter family member, PMID:11500563; contains Pfam
           profile PF02705: K+ potassium transporter
          Length = 782

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 105 AFGFSILKAWCCWIYMKMAKYEVKLESFSSVDLL 4
           A  F  L A C W Y  + +YE  +++  SV+ L
Sbjct: 487 ALAFCFLLAMCTWHYGTLKRYEYDVQNKVSVNWL 520


>At4g38640.1 68417.m05469 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 556

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 20/86 (23%), Positives = 39/86 (45%)
 Frame = +2

Query: 101 KALTEVLSQANTGGVENTLLLNHQGALLAYSGYNDKDARVTAAIASNVWSAYEKHGRNVF 280
           +A+ +   + NT G+ N +L     ALL    Y +K     AAI    +    K    + 
Sbjct: 379 RAIVDNAREENTQGIVNMVLRCCANALLGALDYLNKFTINFAAITGEAYCTSAKMTYELL 438

Query: 281 KEDGLHLILVDCLNGKIAITQVAXLL 358
           + + L  + V+ ++ +I +T +  +L
Sbjct: 439 RRNLLSAVFVETVSTRI-LTGIVFVL 463


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,420,432
Number of Sequences: 28952
Number of extensions: 96565
Number of successful extensions: 232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)