Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b17
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25110.1 68415.m03004 MIR domain-containing protein similar t...   143   9e-35
At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containi...    29   1.9  
At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c...    28   4.3  

>At2g25110.1 68415.m03004 MIR domain-containing protein similar to
           SP|Q99470 Stromal cell-derived factor 2 precursor
           (SDF-2) {Homo sapiens}; contains Pfam profile PF02815:
           MIR domain
          Length = 218

 Score =  143 bits (346), Expect = 9e-35
 Identities = 69/158 (43%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
 Frame = +1

Query: 148 VTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRG 327
           +T GS +KL++   K RLHSHDV YGSGSGQQSVT      D+NS+W+V+P+ G T K+G
Sbjct: 37  ITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQG 96

Query: 328 APIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQEVSCYXXXXXXXXXXXNWTVVC--NND 501
             +K    IRLQH+ T+K LHSH   SP+SGN EVSC+           +W ++   +  
Sbjct: 97  DAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCF-GDDTNSDTGDHWKLIIEGSGK 155

Query: 502 YWRRDTPVKFRHVDTGSYLAGSGRTFGRPINGQGEIVG 615
            W++D  V+ +H+DT  YL    + + R   GQ E+ G
Sbjct: 156 TWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCG 193


>At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 632

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 70  SIATLVTVVFLISIISEKTEAAKNEFVTCGSILKLINTDLKLRLHSHDVKYGSG 231
           SI  L    FL+ +    +E   NEF T  S+LK  +T     +H+H +K+G G
Sbjct: 106 SINGLKDQAFLLYVQLLSSEINPNEF-TFSSLLKSCSTKSGKLIHTHVLKFGLG 158


>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 610

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -3

Query: 245 DCCPDPDPYFTSCE*SLNFKSVLMSFNIDPHVTNSFFAASVFSLIIEMRNTTVTKVAIE 69
           + C + DP + S +  +NF    +S   DP      F  ++F L  E R   +T V ++
Sbjct: 458 ETCLEGDPSYRSMDSFINFSDAWVSQKFDPKACTWAFGMNLFDL-EEWRRQELTSVYLK 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,189,297
Number of Sequences: 28952
Number of extensions: 258230
Number of successful extensions: 632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)