Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b16
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12080.2 68414.m01397 expressed protein                             31   0.56 
At3g52290.1 68416.m05747 calmodulin-binding family protein simil...    29   3.0  
At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ...    28   5.2  
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ...    28   5.2  
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-...    28   5.2  
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ...    27   6.9  
At1g01670.1 68414.m00085 U-box domain-containing protein               27   6.9  

>At1g12080.2 68414.m01397 expressed protein
          Length = 138

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 166 RTIEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILE 291
           +T+EE  V T V +  E      T Q ++     TNEEV++E
Sbjct: 22  KTVEETVVETEVTQQPEESVPAVTEQKSEAPIVETNEEVVVE 63


>At3g52290.1 68416.m05747 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 430

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 97  QGKCPARKVNIVRENYLQAVRMRRTIEEKRVNTSVDRDLESVQ-SQATNQNTQVHAQSTN 273
           QGKC  R+     ++     R++  I E+R+  S D+   + Q  Q  N++     ++ N
Sbjct: 141 QGKCVRRQATSTLQSMQTLARVQYQIRERRLRLSEDKQALTRQLQQKHNKDFDKTGENWN 200

Query: 274 EEVILEVYLETDM 312
           +  +    +E +M
Sbjct: 201 DSTLSREKVEANM 213


>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = +1

Query: 124 NIVRENYLQAVRMRRTIEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLE 303
           N++ EN+L  +   RTI+ K+ N  V    +S  S    +N+  H QS  ++  L ++ E
Sbjct: 23  NVLPENHLGRLNSIRTIDSKK-NRVVVAAQKSESSPI--RNSPRHYQSQAQDPFLNLHPE 79

Query: 304 TDMNRNLGDDQV 339
             M R  G   +
Sbjct: 80  ISMLRGEGTSTI 91


>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = +1

Query: 124 NIVRENYLQAVRMRRTIEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLE 303
           N++ EN+L  +   RTI+ K+ N  V    +S  S    +N+  H QS  ++  L ++ E
Sbjct: 23  NVLPENHLGRLNSIRTIDSKK-NRVVVAAQKSESSPI--RNSPRHYQSQAQDPFLNLHPE 79

Query: 304 TDMNRNLGDDQV 339
             M R  G   +
Sbjct: 80  ISMLRGEGTSTI 91


>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
           domain-containing protein-related contains weak hit to
           Pfam F00627: UBA/TS-N domain; supported by tandem
           duplication of ubiquitin-associated (UBA)/TS-N domain
           protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
           thaliana]
          Length = 508

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 566 ICGDLG*CEACSICSFDGLFHFCF 495
           IC +LG CE  ++C  DG FH+ F
Sbjct: 27  ICAELGVCEEEALCYLDG-FHWDF 49


>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
           XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 947

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 9/134 (6%)
 Frame = +1

Query: 64  PYGITYSSITRQGKCPARKVNIVRENYLQAVRMRRTIEEKRVNTSVDRDLE----SVQSQ 231
           P  I Y +I   G  P  K+N  R    +A +     E +      D ++E    S + +
Sbjct: 95  PRKILYLAI--DGVAPRAKMNQQRSRRFRAAKDAAEAEAEEERLRKDFEMEGQILSAKEK 152

Query: 232 ATNQNTQVHAQSTNEEVILEV----YLETDMNRNLGDDQVHVHAPKGIVPGQ-THNVDPN 396
           A   ++ V    T    IL V    Y+++ +N N G   V V      VPG+  H +   
Sbjct: 153 AETCDSNVITPGTPFMAILSVALQYYIQSRLNHNPGWRYVKVILSDSNVPGEGEHKIMSY 212

Query: 397 IKVRNQKDHAPGVD 438
           I+++    + PG D
Sbjct: 213 IRLQR---NLPGFD 223


>At1g01670.1 68414.m00085 U-box domain-containing protein
          Length = 365

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 130 VRENYLQAVRMRRTIEE-KRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLET 306
           + + Y +  R R  IEE KR     D+ +  V+ +A + ++ V     NEEV+    +E 
Sbjct: 171 IEKMYYEEQRRRLEIEELKREKEQRDK-MRRVREEALSSSSGVTKILYNEEVMRRREVEA 229

Query: 307 DMNR 318
           ++NR
Sbjct: 230 ELNR 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,068,354
Number of Sequences: 28952
Number of extensions: 156922
Number of successful extensions: 495
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)