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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d22
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...   100   4e-22
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            99   6e-22
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...   100   8e-22
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    77   4e-15
At1g34590.1 68414.m04299 hypothetical protein                          29   1.00 
At3g56790.1 68416.m06316 RNA splicing factor-related contains we...    28   3.0  
At5g28430.1 68418.m03453 hypothetical protein                          27   5.3  
At4g27595.1 68417.m03964 protein transport protein-related low s...    27   5.3  
At4g06603.1 68417.m01028 expressed protein                             27   5.3  
At3g60930.1 68416.m06816 expressed protein                             27   5.3  
At5g05440.1 68418.m00586 expressed protein low similarity to cyt...    26   9.3  
At4g35940.1 68417.m05113 expressed protein                             26   9.3  

>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score =  100 bits (240), Expect = 4e-22
 Identities = 54/100 (54%), Positives = 67/100 (67%)
 Frame = +2

Query: 56  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 235
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 236 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 355
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score =   99 bits (238), Expect = 6e-22
 Identities = 55/100 (55%), Positives = 66/100 (66%)
 Frame = +2

Query: 56  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 235
           VGL KGH  T+          + +  RP   KG  +K + F+R L+REV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61

Query: 236 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 355
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101


>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 99.5 bits (237), Expect = 8e-22
 Identities = 55/100 (55%), Positives = 66/100 (66%)
 Frame = +2

Query: 56  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 235
           VGL KGH  TK          +    RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 8   VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57

Query: 236 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 355
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 58  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 47/100 (47%), Positives = 61/100 (61%)
 Frame = +2

Query: 56  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 235
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 236 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 355
           ELLKV+         KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62  ELLKVA---------KRKLGTHKRAKRKREEMSSVLRKMR 92


>At1g34590.1 68414.m04299 hypothetical protein
          Length = 820

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 5   FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 145
           F+   + ++ AP  E A     GH++ +  A + G+TD+A  + PA+
Sbjct: 765 FIAELKDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811


>At3g56790.1 68416.m06316 RNA splicing factor-related contains weak
           similarity to U4/U6-associated RNA splicing factor [Homo
           sapiens] gi|2853287|gb|AAC09069
          Length = 206

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
 Frame = +2

Query: 47  EIAVGLRKGHKTTKISAGRKGITDKAIRI--RPARLKGLQTKHSKFVRDLVREVVGHAQ- 217
           E+A+     HK TK    R  +  + I        L  L   ++K  +D+ + ++   Q 
Sbjct: 88  ELAIDTAVAHKQTKGFFLRVDVLGREIDEYGHVINLSTLMVNNNKHKKDVFQNILKPPQP 147

Query: 218 ------YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLA 346
                  EK+   L +V+K+K   K +++ L    ++K K   L  VLA
Sbjct: 148 FKLTKKEEKKLQTLRRVAKEKEKQKMIRQALFEPQKSKVKLSNLMKVLA 196


>At5g28430.1 68418.m03453 hypothetical protein
          Length = 486

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 5   FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 145
           F+   + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 431 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 477


>At4g27595.1 68417.m03964 protein transport protein-related low
            similarity to SP|P25386 Intracellular protein transport
            protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = +2

Query: 104  KGITDKAIRIRPA----RLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 271
            KG  ++ +++R A    R++ L +K  + + D   + V H  YE +A E   + K +   
Sbjct: 1001 KGNENQELKVREASAAKRIEEL-SKMKESLLDKELQTVIHDNYELKAREASALKKIEELS 1059

Query: 272  KFLKRRLGTHIRAKRKREELSN 337
            K L+    TH     K EE++N
Sbjct: 1060 KLLEEASSTH----EKGEEITN 1077


>At4g06603.1 68417.m01028 expressed protein
          Length = 786

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 5   FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 145
           F+   + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 731 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 777


>At3g60930.1 68416.m06816 expressed protein
          Length = 798

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 5   FLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 145
           F+   + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 743 FMSELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 789


>At5g05440.1 68418.m00586 expressed protein low similarity to
           cytokinin-specific binding protein [Vigna radiata]
           GI:4190976
          Length = 203

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 352 HLSEHVAKFFTLPLGADVCAQSSLQELQS 266
           H+ EHVA   T  +G D C  S +Q + +
Sbjct: 40  HVPEHVAMHHTHDVGPDQCCSSVVQMIHA 68


>At4g35940.1 68417.m05113 expressed protein
          Length = 451

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +2

Query: 107 GITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKR 286
           GI D+A+ +  + +KG++ K  K  R   R      + +K+  +  K  K+K+  +   +
Sbjct: 16  GIRDEAVIV--SSIKGVEEKAKKEQRRKDRRSDKKDKKDKKERKEKKEKKEKKRKEREGK 73

Query: 287 RLGTHIRA-KRKREE 328
            +G+  R+ KR+R+E
Sbjct: 74  EVGSEKRSHKRRRKE 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,342,571
Number of Sequences: 28952
Number of extensions: 152826
Number of successful extensions: 404
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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