Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d20
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55780.1 68414.m06386 heavy-metal-associated domain-containin...    30   1.8  
At2g41640.1 68415.m05145 expressed protein contains Pfam domain,...    28   5.6  
At3g06840.1 68416.m00811 expressed protein                             28   7.4  

>At1g55780.1 68414.m06386 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 133

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
 Frame = +3

Query: 66  IRGAQPGLESGKHELKRMYGTNDREPMWGDTYET--VSRLTKNKFCLSIFL*IYIVTESW 239
           I  A+PG+ S       + G ND+  + G+  +   ++R  K K C++  + +       
Sbjct: 15  IASAKPGVRSVS-----IQGQNDQLVLLGEGIDLAELTRELKKKVCMTTIITVQAAPPQ- 68

Query: 240 QPPTESQR*NYKNDPSLRLCLFFVRGVRVCGSC*NM 347
           QPP       Y   P  R C   +     CG C +M
Sbjct: 69  QPPQPHPMGQYNQMPPARRCTCEIPNSGFCGFCRSM 104


>At2g41640.1 68415.m05145 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 500

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 584 DSVDENDRACIFYIDVPSLFKSTWFY 507
           DS   +DR C  Y DVP++F ST  Y
Sbjct: 166 DSNKSSDRVCDVYHDVPAVFFSTGGY 191


>At3g06840.1 68416.m00811 expressed protein
          Length = 187

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 574 MRMIAPVFSTSTSRHFSKARGFIPILILSTRSEVVNKNK 458
           M  I+P+FS S S+HFS   GF P L      E   K+K
Sbjct: 1   MSNISPIFSISNSQHFSD-YGFDPQLHYFQVMEEARKHK 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,754,246
Number of Sequences: 28952
Number of extensions: 286098
Number of successful extensions: 691
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)