Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10d09
(468 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 137 4e-33
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 136 9e-33
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 136 9e-33
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 134 2e-32
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 134 4e-32
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi... 32 0.17
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 29 2.1
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 29 2.1
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 28 2.7
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 28 2.7
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi... 27 4.8
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 27 8.4
At1g15030.1 68414.m01796 expressed protein 27 8.4
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 137 bits (331), Expect = 4e-33
Identities = 63/106 (59%), Positives = 86/106 (81%)
Frame = +1
Query: 91 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 270
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 271 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 408
ERERR ++VP+ SA++ D I+VD +T +ML L ++ +G+ +P
Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEP 122
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 136 bits (328), Expect = 9e-33
Identities = 63/106 (59%), Positives = 85/106 (80%)
Frame = +1
Query: 91 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 270
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 271 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 408
ERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ +P
Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 136 bits (328), Expect = 9e-33
Identities = 63/106 (59%), Positives = 85/106 (80%)
Frame = +1
Query: 91 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 270
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 271 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 408
ERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ +P
Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 134 bits (325), Expect = 2e-32
Identities = 63/106 (59%), Positives = 84/106 (79%)
Frame = +1
Query: 91 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 270
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 271 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 408
ERERR ++VP+ SA++ D I+VD +T +ML L ++ G+ P
Sbjct: 77 ERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDP 122
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 134 bits (323), Expect = 4e-32
Identities = 62/101 (61%), Positives = 84/101 (83%)
Frame = +1
Query: 91 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 270
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 271 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 393
ERERR ++VP+ SA++ D ++VD +T +ML L ++I G+
Sbjct: 77 ERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGI 117
>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 790
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 205 THLMRRLRHSQVRGISIKLQEEERE-RRDNYVPEVSALEHDIIEVDPDTKDML 360
T L+ H + + I LQ+ +E RR YVP+ S + HD +E D +DML
Sbjct: 668 TFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDML 719
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 407 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 300
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 407 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 300
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 112 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 285
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 112 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 285
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737
>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 612
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 253 IKLQEEERERRDNYVPEVSALEHDIIEVDPD 345
+K EEE R+ YVP+ S + HD+ E + +
Sbjct: 508 LKKLEEEMRIRNGYVPDTSWILHDMDEQEKE 538
>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
identical to SP|Q9SMV7 DNA mismatch repair protein
MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
thaliana}; GC donor splice site at exon 11
Length = 1109
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 104 IQD*HLILIQIKEYVKKSLSFLPSLLGIKLL 196
+ D +L +IK V+ S S LP+LLG K+L
Sbjct: 635 LPDLERLLGRIKSSVRSSASVLPALLGKKVL 665
>At1g15030.1 68414.m01796 expressed protein
Length = 360
Score = 26.6 bits (56), Expect = 8.4
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 164 FLPSLLGIKLL-DLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCL 310
++PSL GI++ D+ + + R+ EES S+FR S G ++ S++ L
Sbjct: 119 YVPSLSGIQVYADVDALTSSLQARRQGEESESDFRDSSSEGSSSESERGL 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,078,502
Number of Sequences: 28952
Number of extensions: 166787
Number of successful extensions: 501
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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