Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c12
         (342 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65600.1 68418.m08253 legume lectin family protein / protein ...    33   0.066
At5g10530.1 68418.m01219 lectin protein kinase, putative similar...    28   1.9  
At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1...    27   2.5  
At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containi...    27   2.5  
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila...    27   2.5  
At3g45860.1 68416.m04963 receptor-like protein kinase, putative ...    27   3.3  
At5g60060.1 68418.m07531 F-box family protein various predicted ...    26   5.7  
At5g25800.1 68418.m03062 exonuclease family protein contains exo...    26   7.6  
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera...    26   7.6  
At4g15470.1 68417.m02364 expressed protein low similarity to N-m...    25   10.0 
At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein / ...    25   10.0 
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S...    25   10.0 
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S...    25   10.0 

>At5g65600.1 68418.m08253 legume lectin family protein / protein
           kinase family protein contains Pfam domains PF00138:
           Legume lectins alpha domain, PF00139: Legume lectins
           beta domain and PF00069: Protein kinase domain
          Length = 675

 Score = 32.7 bits (71), Expect = 0.066
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 268 LVAVMLDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNA 137
           LV V  D   +PGWD      H     + L S N  SW ++ ++
Sbjct: 153 LVHVEFDTFNNPGWDPNDVGSHVGINNNSLVSSNYTSWNASSHS 196


>At5g10530.1 68418.m01219 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 651

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -3

Query: 268 LVAVMLDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADN 140
           LV V  D   +P WD      H     + L S N  SW +  +
Sbjct: 136 LVYVEFDTFTNPEWDPLDVKSHVGINNNSLVSSNYTSWNATSH 178


>At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1)
           identical to male sterility 1 protein [Arabidopsis
           thaliana] gi|15554513|emb|CAC69663 PMID:11696184;
           contains Pfam profile PF00628: PHD-finger; identical to
           cDNA male sterility 1 protein (ms1 gene) GI:15554514
          Length = 672

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 74  IRNLLRANNQIFKNVAQQRNMSVICTPPRNKVSRGEMI 187
           I NLL ++N     +  Q +M  + T   NK++RG+++
Sbjct: 405 ISNLLPSSNNELITLQNQNSMGKMATNGHNKITRGQVM 442


>At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 978

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -3

Query: 211 HHHQAGEEDHLTSGNL------VSWRSADNAHVPLLSDILKDLVVSAK*IPNSKH 65
           H   +G+E H    N+      VS R++   HVP LS++L D+    K    S+H
Sbjct: 720 HEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRH 774


>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
           to SP|P36175 O-sialoglycoprotein endopeptidase (EC
           3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
           contains Pfam profile PF00814: Glycoprotease family
          Length = 480

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 113 NVAQQRNMSVICTPPRNKVSRGEMIFLAGL 202
           N+ + +N+ ++C PP      G M+   GL
Sbjct: 383 NIVENKNLKLVCPPPSLCTDNGVMVAWTGL 412


>At3g45860.1 68416.m04963 receptor-like protein kinase, putative
           similar to receptor-like protein kinase 4 (gi:13506745),
           5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 676

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 283 VIILLLVAVMLDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHV 131
           V +L   ++ L V Q PG+  R + H Q G  D L S N  +  S D+A +
Sbjct: 621 VQMLTTSSIALAVPQRPGFFFRSSKHEQVGLVDRL-SINTSALCSVDDASI 670


>At5g60060.1 68418.m07531 F-box family protein various predicted
           proteins, Arabidopsis thaliana ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 374

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 232 GWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLSDIL 110
           G DS     H  G+   L SGN   W+  DN+   +  DI+
Sbjct: 175 GEDSAIIAIHSGGKLGFLKSGNDEKWKILDNSWNVIYEDIM 215


>At5g25800.1 68418.m03062 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 567

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 180 SPLETLFLGGVQITLMFLC*ATFLKIWLLARSKFLIPNILF*Y 52
           SP  TL L  VQ  + ++    F+  W+  ++K LIP ++  Y
Sbjct: 46  SPETTLNLQDVQGLVTWVLAEGFMPSWVFIKNKPLIPKVVLLY 88


>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glucuronosyl transferase homolog,
           Lycopersicon esculentum, PIR:S39507 ;contains Pfam
           profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
           transferase
          Length = 460

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 289 FFVIILLLVAVMLDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVS 158
           F V IL       D  +HP +  R   H++ GEED L+     S
Sbjct: 35  FSVTILHTSYNFPDPSRHPHFTFRTISHNKEGEEDPLSQSETSS 78


>At4g15470.1 68417.m02364 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 256

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 210 TTIRPARKIISPLETLFLGGVQITLMFLC*ATFLKIWLL 94
           TT+  A  +++P     L G    L+FLC   F+ IW L
Sbjct: 64  TTLISAVVVLNPPVNDLLTGSPGILLFLCIVPFILIWPL 102


>At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein /
           fasciclin domain-containing protein contains Pfam
           profile PF02469: Fasciclin domain
          Length = 445

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 235 PGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLSDILK 107
           P W S  +HHH+    DHL     V+    D+A +    D+++
Sbjct: 120 PQWPSL-SHHHRTLSNDHLHLTVDVNTLKVDSAEIIRPDDVIR 161


>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
            SP|O04379 Argonaute protein (AGO1) {Arabidopsis
            thaliana}; contains Pfam profiles PF02171: Piwi domain,
            PF02170: PAZ domain
          Length = 1050

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 223  SRPAHHHQAGEEDHLTSGNLVS 158
            SRPAH+H   +E++ T+  L S
Sbjct: 941  SRPAHYHVLWDENNFTADGLQS 962


>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
            SP|O04379 Argonaute protein (AGO1) {Arabidopsis
            thaliana}; contains Pfam profiles PF02171: Piwi domain,
            PF02170: PAZ domain
          Length = 1048

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 223  SRPAHHHQAGEEDHLTSGNLVS 158
            SRPAH+H   +E++ T+  L S
Sbjct: 939  SRPAHYHVLWDENNFTADGLQS 960


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,021,665
Number of Sequences: 28952
Number of extensions: 129006
Number of successful extensions: 322
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)