Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c06
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06360.1 68418.m00712 ribosomal protein S8e family protein co... 276 1e-74
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR... 31 0.59
At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recogniti... 30 1.4
At3g59140.1 68416.m06593 ABC transporter family protein putative... 29 2.4
At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb... 29 2.4
At4g35870.1 68417.m05094 expressed protein 29 4.2
At2g42610.2 68415.m05274 expressed protein contains Pfam profile... 29 4.2
At2g42610.1 68415.m05273 expressed protein contains Pfam profile... 29 4.2
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 29 4.2
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 29 4.2
At1g65710.1 68414.m07458 expressed protein ; expression supporte... 29 4.2
At3g28770.1 68416.m03591 expressed protein 28 5.5
At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR... 28 7.3
At5g25410.1 68418.m03014 expressed protein contains Pfam profil... 28 7.3
At2g40950.1 68415.m05056 bZIP transcription factor family protei... 28 7.3
At2g22795.1 68415.m02704 expressed protein 27 9.6
At1g49610.1 68414.m05562 F-box family protein contains F-box dom... 27 9.6
>At5g06360.1 68418.m00712 ribosomal protein S8e family protein
contains Pfam profile PF01201: Ribosomal protein S8e
Length = 260
Score = 276 bits (677), Expect = 1e-74
Identities = 134/226 (59%), Positives = 160/226 (70%), Gaps = 1/226 (0%)
Frame = +2
Query: 53 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 232
MPQ +YI+ H+K G RLD+ GIK K+ K+ EK
Sbjct: 1 MPQGDYIDLHRKRNGYRLDHFERKRKKEAREVHKHSTMAQKSLGIKGKMIAKKNYAEKAL 60
Query: 233 MKKKIKAHEEKNVKHNT-EKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 409
MKK +K HEE + + E V EGA+P YLLDR+ +RAKVLSN IKQKRKEKAGKW+VP
Sbjct: 61 MKKTLKMHEESSSRRKADENVQEGAVPAYLLDREDTTRAKVLSNTIKQKRKEKAGKWEVP 120
Query: 410 IPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKK 589
+PKVR A+ E+F+V++SGK K K WKRMVTK TFVG FTRKPPK+ERFIRP LRF K
Sbjct: 121 LPKVRPVAEDEMFRVIRSGKRKTKQWKRMVTKATFVGPAFTRKPPKYERFIRPSGLRFTK 180
Query: 590 AHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTVIEVNISE 727
AHVTHPELK TFCL IIG+KKNP+ MYTSLGV+T+GT+IEVN+SE
Sbjct: 181 AHVTHPELKCTFCLEIIGIKKNPNGPMYTSLGVMTRGTIIEVNVSE 226
>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1095
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 347 KVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSG 466
+VL + ++ K KE+ W+ +P ++++ D EV KVLK G
Sbjct: 386 RVLGSFMRGKGKEE---WEFSLPTLKSRLDGEVEKVLKVG 422
>At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein contains Pfam profile
PF02493: MORN repeat
Length = 871
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +2
Query: 230 QMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKE 385
++KKK + E+K TE+ + +PVY ++ V ++ K+ N ++K K+
Sbjct: 632 ELKKKEQEEEKKTEMGLTEEDEDVLVPVYKEEKVVTAKEKIQENKQEEKYKD 683
>At3g59140.1 68416.m06593 ABC transporter family protein putative
multi resistance protein mrp - Arabidopsis thaliana,
EMBL:ATMRPPROT
Length = 1453
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 245 IKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVL--SNMIKQKRKEK 388
+ AH E V PV ++R + S++KVL S +IKQ+ +EK
Sbjct: 823 VNAHRETAGSERVVAVENPTKPVKEINRVISSQSKVLKPSRLIKQEEREK 872
>At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and
gb|AA595092 come from this gene
Length = 234
Score = 29.5 bits (63), Expect = 2.4
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Frame = +2
Query: 203 NKERRNEKIQMKKKIKAHEEKNVK---HNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQ 373
+++ R ++ Q ++ + + K VK EK AE A R + K L +K+
Sbjct: 27 DRQTREKEEQYWREAEGPKSKAVKKREEEAEKKAETAAKKLEAKRLAEQEEKELEKALKK 86
Query: 374 KRKEKAGKWDVPIPKV------RAQADAEVFKVLKSGKSKRK 481
K KA + VP+PKV R + + +V K+ SK+K
Sbjct: 87 PDK-KANRVTVPVPKVTEAELIRRREEDQVALAKKAEDSKKK 127
>At4g35870.1 68417.m05094 expressed protein
Length = 817
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/101 (21%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = +2
Query: 218 NEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGK 397
+EK++ ++++A E + E A+GA +++ +DV + K + + + +R + GK
Sbjct: 312 DEKLRKLQELRADLESQLAAYKEGRAQGAGVAFVMFKDVYTANKAVQD-FRNERSRRTGK 370
Query: 398 WDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRM-VTKVTFV 517
+ + ++R Q + +KV ++ + W + +TKV +
Sbjct: 371 F-FSVTELRLQRNQ--WKVDRAPLATDIYWNHLGLTKVALI 408
>At2g42610.2 68415.m05274 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 177
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 251 AHEEKNVKHNTEKVAEGALPVYLLD-RDVQSRAKVLSNMIKQKRK 382
A+EE T A GA+ VYL + R+ Q++A+ + K+K+K
Sbjct: 111 AYEENGGPPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKK 155
>At2g42610.1 68415.m05273 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 177
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 251 AHEEKNVKHNTEKVAEGALPVYLLD-RDVQSRAKVLSNMIKQKRK 382
A+EE T A GA+ VYL + R+ Q++A+ + K+K+K
Sbjct: 111 AYEENGGPPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKK 155
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 425 AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKK 589
A + E +KS + KRK WK + TK+T E ++ +RF+ + R K+
Sbjct: 241 ASDEEEDHHQVKSSRKKRKYWKGLFTKLT--KELMEKQEKMQKRFLETLEYREKE 293
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 425 AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKK 589
A + E +KS + KRK WK + TK+T E ++ +RF+ + R K+
Sbjct: 164 ASDEEEDHHQVKSSRKKRKYWKGLFTKLT--KELMEKQEKMQKRFLETLEYREKE 216
>At1g65710.1 68414.m07458 expressed protein ; expression supported
by MPSS
Length = 455
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +2
Query: 188 KAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPV 313
K++ N+E E++ + K ++HEE++ K ++K + + PV
Sbjct: 40 KSEKLNQEEEEEEVVVIKHTRSHEERSKKTESDKDSPVSSPV 81
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 188 KAKIFNKERRNEKIQMKKK---IKAHEEKNVKHNTE 286
K ++ KE+++ K Q KKK +K EEK +K N E
Sbjct: 1175 KNEVDKKEKKSSKDQQKKKEKEMKESEEKKLKKNEE 1210
>At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1085
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 377 RKEKAGKWDVPIPKVRAQADAEVFKVLKSG 466
R E +W++ +P++ A D ++ +LK G
Sbjct: 396 RGESKHEWELQLPRIEASLDGKIESILKVG 425
>At5g25410.1 68418.m03014 expressed protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 369
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 215 RNEKIQMKKKIKAHEEKNVKHNTE 286
+N KIQMK + HE +N NT+
Sbjct: 60 KNHKIQMKPSVSRHELRNQTDNTK 83
>At2g40950.1 68415.m05056 bZIP transcription factor family protein
similar to AtbZIP transcription factor GI:17065880 from
[Arabidopsis thaliana]; contains Pfam profile: bZIP
transcription factor PF00170
Length = 721
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 404 VPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVG 520
+PIP+++ Q K KS K +A + V ++F+G
Sbjct: 334 IPIPRLKPQNTLGTSKAKKSESKKSEAKTKKVASISFLG 372
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 27.5 bits (58), Expect = 9.6
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +2
Query: 206 KERRNEKIQMKKKIKAH-EEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRK 382
+E +++ + K+K+++ +EKN TEK+ L D + S+ K + K
Sbjct: 464 EETMDKETEAKEKVESSSQEKNEDKETEKIESSFLEETKEKEDETKEKEESSSQEKTEEK 523
Query: 383 EKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPK 547
E K + D E K+ K S ++ K T+ E+ +++ K
Sbjct: 524 ETETKDNEESSSQEETKDKENEKIEKEEASSQEESKENETETKEKEESSSQEETK 578
>At1g49610.1 68414.m05562 F-box family protein contains F-box domain
Pfam:PF00646
Length = 354
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = -3
Query: 531 VKFSPT-NVTLVTMRFQAFLFDLPDFRTLNTSASAWALT-LGMGTSHFPAFSLRFCFIML 358
+KF+ + NV + + F L+D+PD+ +N+S ++ + G + +L FC
Sbjct: 113 IKFAMSRNVENLFLSFDFRLYDVPDYLYINSSVKQLSIAKILSGCPIIESLTLHFC---- 168
Query: 357 DNTLALD*TSLSS 319
D + LD T S
Sbjct: 169 DQLMVLDLTKSPS 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,605,278
Number of Sequences: 28952
Number of extensions: 256157
Number of successful extensions: 829
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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